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27 protocols using arsenazo 3

1

Quantifying Ca2+ Release from Heavy SR

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Ca2+ release from heavy SR was determinated using the Ca2+-sensitive dye Arsenazo III (Sigma-Aldrich), modified as previously described (Gurrola et al., 1999 (link); Xiao et al., 2016 (link)). Briefly, the absorbance was monitored at 650 nm by a Compact UV-visible spectrophotometer (Eppendorf, Biophotometer Plus). Heavy SR vesicles (20 μg) were actively loaded with Ca2+ at room temperature in a 1 mL basal buffer containing 7.5 mM sodium pyrophosphate, 100 mM KCl, 20 mM MOPS, pH 7.0, supplemented with 5 mM creatine phosphate disodium salt tetrahydrate (ICN Biomedicals Inc), 25 μM Arsenazo III, 1 mM ATP/MgCl2 (Sigma-Aldrich), and 12 μg/mL creatine phosphokinase (porcine heart, Calbiochem). Ca2+ loading was started by consecutive additions of 50 nmol twice and 20 nmol thrice of CaCl2 before the addition of Intrepicalcin. The total [Ca2+] loaded into the SR was quantified by the addition of the Ca2+ ionophore A23187 (5 μM) and the absorbance was transformed to nmoles [Ca2+] by a standard curve generated by consecutive additions of CaCl2 (10-20 μM).
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2

Measuring Ca2+ Release from Heavy SR

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Ca2+ release from heavy SR was measured using the Ca2+-sensitive dye Arsenazo III (Sigma-Aldrich), modified as previously described (Gurrola et al., 1999 (link); Chen et al., 2003 (link)). In brief, the absorbance was monitored at 650 nm by a compact UV-visible spectrophotometer (BioPhotometer Plus; Eppendorf). Heavy SR vesicles (20 µg) were actively loaded with Ca2+ at room temperature in a 1-ml basal buffer containing 100 mM KCl, 7.5 mM sodium pyrophosphate, and 20 mM MOPS, pH 7.0, supplemented with 25 µM Arsenazo III, 1 mM ATP/MgCl2 (Sigma-Aldrich), 5 mM creatine phosphate disodium salt tetrahydrate (ICN Biomedicals Inc.), and 12 µg/ml creatine phosphokinase (porcine heart; EMD Millipore). Ca2+ loading was started by consecutive additions of 50 nmol twice and 20 nmol thrice of CaCl2 before the addition of calcins. The total [Ca2+] loaded into the SR was quantified by the addition of the Ca2+ ionophore A23187 (5 µM), and the absorbance was converted to nmol [Ca2+] by a standard curve generated by sequential additions of CaCl2 (10–20 µM).
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3

Characterization of Metal-Protein Complexes

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1H and 13C NMR spectra were obtained using a Bruker 300 instrument, and chemical shifts are reported in ppm on the δ scale relative to TMS or solvent. Fast atom bombardment (FAB) or Electrospray iodization (ESI) high resolution mass spectra (HRMS) were obtained on JEOL double sector JMS-AX505HA mass spectrometer (University of Notre Dame, IN). Size-exclusion HPLC (SE-HPLC) chromatograms were obtained on Agilent 1200 equipped with a diode array detector and an in-line IN/US γ-Ram Model 2 radiodetector (Tampa, FL), fitted with BioSep-SEC S 3000 column (Phenomenex, Torrance, CA). All absorbance measurements for the protein concentration and ligand protein ratio were obtained on an Agilent 8453 diode array spectrophotometer equipped with an 8-cell transport system (designed for 1-cm cells). Arsenazo III (AAIII, 2,2-(1,8-dihydroxy-3,6-disulfonaphthylene-2,7-bisazo) bis-benzenearsonic acid), copper atomic absorption standard solution, and diferric (holo) transferrin were purchased from Sigma-Aldrich (St. Louis, MO) and used as received. C-DOTA analogues were purchased from Macrocyclics (Dallas, TX).
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4

Calcium Levels in Leydig Cells

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Control and delor-treated Leydig cells were lysed in cold RIPA buffer (Thermo Scientific) and then sonicated for 60 s on ice and centrifuged at 10,000 g for 15 min. Ca2+ was estimated in the supernatants using Arsenazo III (Sigma–Aldrich) according to the modified method of Michaylo and Ilkova (1971 (link)). The intensity of the purple complex formed with the reagent was read at 600 nm in a spectrophotometer (Labtech LT-4000MS; Labtech International, Uckfield, UK) with Manta PC analysis software. The proteins were estimated by modified Lowry’s method (Lowry et al. 1951 (link)). Concentrations of Ca2+level in samples of Leydig cells after treatment with d103 and d106 in various doses and combinations were compared with the control, which was arbitrarily set at 1. The Ca2+ levels were calculated as μg/ml.
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5

Calcium Release Quantification Protocol

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Six disk-shaped samples (1 mm thickness and 7 mm diameter) from each material (n = 6) were prepared using silicone molds, and individually light-cured for 40 s. The samples were stored in 2 mL distilled water, and storage solutions were exchanged after 28 and 45 days with equal volume replacement. The calcium release was determined by mixing the storage solutions with Arsenazo III in 20 mM HEPES at pH 7.4 (Sigma Aldrich, St. Louis, USA). The analysis of calcium release through this solution was performed using a UV-Visible spectrophotometer (Powerwave 340; Biotek, St. Paul, USA) with 656 nm wavelength for 3 s adopting the Arsenazo III colorimetric method [21 (link)]. Aliquots of 5 μL of the samples (diluted 1 : 10 and partially neutralized) were added to 50 μL of deionized water before UV-Vis analysis. For calibration, standards containing 40 to 200 μg Ca/mL solutions (Sigma Aldrich) were used.
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6

Mitochondrial Calcium Regulation Assay

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All the chemicals used were analytic grade. Sucrose (S0389), CaCl2 (C5080), succinic acid (S7501), L‐glutamic acid (G12519), malic acid (M0625), EGTA (E0396), ADP (01905), safranine‐O (S2255), and Arsenazo III (A92775) were from Sigma Chem Co (MO, USA). Bovine serum albumin was from GoldBio (E217100, MO, USA). H3PO4, KCl and MgCl2 were from J.T. Baker Chemical Co. (NJ., USA), Ruthenium red was from Merck KGaA (R2751, Darmstadt, Germany). Cyclosporin A was from Sandimmum (Sandoz, Basilea, Swiss). Calcium Green‐5N was from Thermo Fisher Scientific (C3737 MA, USA).
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7

Anaerobic U(VI) Reduction and Oxidation

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U(VI) reduction was tested in anaerobic serum vials (N2 headspace) with 2 mL reaction volumes containing 1 mM NADH (Thermo Fisher Scientific Acros Organics), 0.5 mM uranyl acetate, (J.T. Baker/Avantor Performance Materials) and 10 μM protein in HEPES buffer. The disappearance of U(VI) was monitored over time with the reagent Arsenazo (III) based on an updated Arsenazo protocol (Golmohammadi et al., 2012 ). At each timepoint, the concentration of U(VI) in a reaction subsample was measured using an anaerobic plate reader (Tecan) at 651nm. The reaction included 8 μL of sample, 8 μL DTPA solution (2.5% diethylenetriaminepenta-acetic acid (Sigma-Aldrich)), 4 μL 10% L-tartaric acid (Sigma-Aldrich), 4 μL Arsenazo Solution (3.2 mM Arsenazo-III (Sigma-Aldrich), 0.5 N NaOH (Sigma-Aldrich)), and 176 μL of dilute H2SO4 (Fisher-Scientific) (pH 2). U(VI) oxidation experiments were performed following reduction of U(VI) and anaerobic incubation overnight. Following bubbling with 150 mL ambient air and aerobic incubation for 5 hours, U(VI) concentration was measured.
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8

Evaluating Calcium Levels in Chicken Sperm

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Control or treated sperm suspensions (20 μL; final concentration 2 × 106 cells/mL) were centrifuged at 150 g for 15 min and lysed in RIPA buffer at 4 °C for 30 min, followed by sonication for 60 s on ice. The lysate was centrifuged at 10,000 g for 15 min. The concentration of Ca2+ was estimated in the supernatants using Arsenazo III (Sigma–Aldrich, Saint Quentin Fallavier, France) according to the modified method by [31 (link)]. The intensity of the purple complex formed with the reagent was read at 600 nm in a spectrophotometer (Labtech LT-4000MS; Labtech International Ltd., Uckfield, UK) with Manta PC analysis software. The protein concentration was estimated in the pellet by modified Lowry’s method [32 (link)]. The Ca2+ levels were calculated as μg/mL. The experiment was performed at 2 times (5 and 20 min) after different treatments (chemerin 50 ng/mL, chemerin 150 ng/mL, chemerin 500 ng/mL, chicken CMKLR1 Ab (10 mg/mL) and chicken CMKLR1 Ab (10 mg/mL) + chemerin 500 ng/mL). It was repeated 6 times (about 2 times per week) using different batches of adult chicken semen.
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9

Yeast Surface Display Protocol

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The pCTcon2 plasmid used for yeast surface display was purchased from Addgene. The genes, including EGFP, mCherry, SpyTag, SpyCatcher, CL7, and Im7, were purchased from Integrated DNA Technologies (table S1). The MFP3/MFP5 genes were ordered from GENEWIZ. The SUP gene was obtained as a gift from C. He at the University of Chicago. Uranyl nitrate was purchased from Fisher Scientific, Arsenazo III was from Sigma-Aldrich, and other reagents and all primers were from Sangon Biotech. Seawater was collected by the Coastal Marine Laboratory at the Hong Kong University of Science and Technology (HKUST). The porcine skin was obtained from a local supermarket (ParknShop).
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10

Quantification of Calcium and Glycosaminoglycans

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A Pierce BCA protein assay kit (Thermo Fisher) was used following the manufacturerʼs instructions. Calcium quantification was performed on HCl-extracted samples using Arsenazo III reagent27 (link). Briefly, samples were completely dissolved by boiling with reflux in 1 M HCl, then neutralized to pH 7.0 by addition of 1 M NaOH. Neutralized samples were assayed by addition of one volume of 100 μM Arsenazo III (Sigma) and spectrophotometric reading at 595 nm. GAG was assayed on matrix extracted from 152 cm2 monolayers using a commercially available kit (Blyscan, Biocolor Life Science Assays, County Antrim, UK).
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