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5 protocols using vehicle dimethyl sulfoxide dmso

1

Muscle Incubation with Undercarboxylated Osteocalcin

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Muscles were evenly divided longitudinally into halves to improve the effusion of ucOC into muscle fiber ex vivo, similar to what has been performed in rat muscle in previous studies (16 (link)–18 (link)). The whole ucOC stimulation process is shown in Figure S1 in Supplementary Material. In experiments without the ERK inhibitor U0126, muscle samples were preincubated in 30°C baths containing carbogenated KHB buffer for 1 h. In experiments with U0126 (N = 5), after 30 min preincubation, muscle samples were exposed to the ERK inhibitor U0126 (1 µM) (Cell Signaling, MA, USA) or dimethyl sulfoxide (DMSO) vehicle (Sigma-Aldrich, MO, USA) for 30 min. Then, muscle samples were stimulated for 90 min with increasing doses [0 ng mL−1 (N = 6), 0.3 ng mL−1 (N = 10), 3 ng mL−1 (N = 10), 10 ng mL−1 (N = 14), or 30 ng mL−1 (N = 10)] of recombinant ucOC (Bachem, Bubendorf, Switzerland). These doses of ucOC were chosen because they are within the physiological range in mice (7 (link), 31 (link)). In experiments without U0126, muscle halves from the same mouse were treated with KHB buffer control or ucOC. In experiments with U0126, muscle halves from the same mouse were treated with DMSO, DMSO with ucOC, U0126, and U0126 with ucOC, respectively.
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2

3D Renal Tubule Matrigel Culture

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RPTECs (1.32 ×105 cells/cm2) were seeded onto black 24 well glass bottom plates (Cellvis, Mountain View, CA) coated with 300 μL of growth factor reduced Matrigel (Corning, NY) within a range of 7–8 mg/mL. Cells were left at 37 °C for 16 hours to induce the formation of an early network of proximal tubules and then covered with a second layer of Matrigel (285 μL) to obtain a 3D system (14 (link)). To manipulate the Vm, thirty minutes after seeding (day 0), the renal cells were chronically cultured with media supplemented with either Dimethyl Sulfoxide (DMSO) – vehicle (Sigma-Aldrich, St. Louis, MO), pinacidil 100 μM (Sigma-Aldrich, St. Louis, MO) or glibenclamide 50 μM (Sigma-Aldrich, St. Louis, MO). Cell cultures were analyzed at different days: 1,3,7,14,21.
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3

Cell Line Cultivation for Cancer Research

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The LNCaP cell line, which was derived from a metastatic site of the left supraclavicular lymph node, the DU145 cell line, which was derived from a metastatic site in the brain, and the human immortalized prostatic cell line PNT1A were obtained from American Type Culture Collection (Manassas, VA, USA). The cells were cultured in Gibco RPMI-1640 medium containing 10% fetal bovine serum (FBS; Thermo Fisher Scientific, Inc., Waltham, MA, USA) at 37°C in a humidified atmosphere containing 5% CO2. BCTC and vehicle dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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4

Immortalized Podocyte Culture and Treatment

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Immortalized human podocytes were cultured in RMPI 1640 (Corning, Tewksbury, MA, USA) supplemented with 10% fetal bovine serum (FBS) (Corning, Tewksbury, MA, USA), 1% 100 X Penicillin Streptomycin L-Glutamine (PSG) (Corning, Tewksbury, MA, USA), and 1% Insulin-Transferrin-Selenium-Ethanolamine (ITS-X) (Gibco, Gaithersburg, MD, USA) [39 (link)]. Proliferating podocytes were cultured in a humidified atmosphere with 5% CO2 at 33 °C and the media was changed twice per week and cells were passaged at ~70–80% confluence. Differentiation was induced by placing the cells at 37 °C under the same atmospheric conditions, for 14 days. Differentiated cells were treated with puromycin aminonucleoside (PAN) (Sigma-Aldrich, St. Louis, MO, USA) at 25 ug/mL or with pioglitazone (Alfa Aesar, Tewksbury, MA, USA) at 10 μM. Control cells received treatment of vehicle dimethyl sulfoxide (DMSO) (Sigma-Aldrich, St. Louis, MO, USA). Cells were harvested after 24 h and total RNA isolated.
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5

Inhibition of Kinase Pathways

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Inhibitors MEK inhibitor GSK1120212/Trametinib, ROCK inhibitor Fasudil, BRAF inhibitor PLX-4720 were bought from Selleck Chemicals, Houston, TX, USA. ERK inhibitor SCH772984 was provided by Merck & Co, Whitehouse Station, NJ, USA (via a MTA). ROCK inhibitor GSK269962A was from Axon Medchem, Groningen, the Netherlands. Metabolic poison phenyl arsine oxide (PAO) and vehicle dimethylsulfoxide (DMSO) were from Sigma-Aldrich, St. Louis, MO, USA.
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