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Pool oligonucleotides

Manufactured by Integrated DNA Technologies

Pool oligonucleotides are laboratory equipment used to store and manage collections of synthetic DNA or RNA molecules. This product allows researchers to maintain and access a set of oligonucleotides for various experimental purposes.

Automatically generated - may contain errors

2 protocols using pool oligonucleotides

1

Pooled Oligonucleotide Library Construction

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Pool oligonucleotides (Integrated DNA Technologies) were as follows:
5´–[P]–CGAGNNNNNNNNNNNNNNNNNNNNNNNNNC–3´
5´–[P]–ACGAGNNNNNNNNNNNNNNNNNNNNNNNNN–3´
…Wherein 5´–[P] denotes a 5´ Phosphate, and N denotes an equimolar mixture of all four nucleotides. Oligonucleotides were each resuspended in annealing buffer (10 mM Tris, pH 7.0, 50 mM NaCl) to 100 µM. 10 µL of each oligo were mixed in a 0.2 mL PCR tube; this mixture was heated to 95°C for 10 minutes and slowly annealed to 25°C over the course of two hours in a thermocycler. The reaction was snap-cooled on ice and diluted 100-fold with ice-cold annealing buffer. 1 µL of this diluted duplex mix was ligated into 25 ng of BbsI-cut sgINTgpc, in 12 µL final volume, using the Quick Ligation Kit (New England Biolabs). The entire reaction was transformed into 120 µL of XL10-Gold ultracompetent cells (Agilent), plated onto 12 LB Ampicillin plates and grown overnight at 37°C. Seven bacterial colonies were picked for Sanger sequencing (Supplementary Fig. 9), and the remainder were pooled by scraping the plates into 100 mL of liquid LB(Amp). Bacteria were pelleted by ultracentrifugation, and the plasmid pool was harvested in a single plasmid maxi-prep (QIAgen) (Supplementary Figs. 9–10).
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2

Pooled Oligonucleotide Library Construction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pool oligonucleotides (Integrated DNA Technologies) were as follows:
5´–[P]–CGAGNNNNNNNNNNNNNNNNNNNNNNNNNC–3´
5´–[P]–ACGAGNNNNNNNNNNNNNNNNNNNNNNNNN–3´
…Wherein 5´–[P] denotes a 5´ Phosphate, and N denotes an equimolar mixture of all four nucleotides. Oligonucleotides were each resuspended in annealing buffer (10 mM Tris, pH 7.0, 50 mM NaCl) to 100 µM. 10 µL of each oligo were mixed in a 0.2 mL PCR tube; this mixture was heated to 95°C for 10 minutes and slowly annealed to 25°C over the course of two hours in a thermocycler. The reaction was snap-cooled on ice and diluted 100-fold with ice-cold annealing buffer. 1 µL of this diluted duplex mix was ligated into 25 ng of BbsI-cut sgINTgpc, in 12 µL final volume, using the Quick Ligation Kit (New England Biolabs). The entire reaction was transformed into 120 µL of XL10-Gold ultracompetent cells (Agilent), plated onto 12 LB Ampicillin plates and grown overnight at 37°C. Seven bacterial colonies were picked for Sanger sequencing (Supplementary Fig. 9), and the remainder were pooled by scraping the plates into 100 mL of liquid LB(Amp). Bacteria were pelleted by ultracentrifugation, and the plasmid pool was harvested in a single plasmid maxi-prep (QIAgen) (Supplementary Figs. 9–10).
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