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19 protocols using anti ldlr

1

Protein Expression in Skin Tissue

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Skin tissue (20% w/v) was lysed in a boiling Laemmli sample buffer, resolved on SDS-polyacrylamide gels and transferred to nitrocellulose membranes. Membranes were probed with anti Hmgcr, anti Ldlr (Abcam, Cambridge, UK), anti phosphor-p38 (Tyr180/Tyr182) (Cell signaling technology, Danvers, MA), anti FXR, anti SREBP-2 (CRL-2545) (ATCC), anti Gapdh and anti β-actin (Santa Cruz Biotechnology, Santa Cruz, CA) which were detected using HRP-based chemiluminescence (ECL, Pierce Biotechnology, Rockford, IL). Each sample was prepared identically from five individual animals and, within each group, results were highly reproducible.
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2

Analyzing PCSK9 and LDLR Proteins

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Western blotting was performed as described [37 (link)]. The primary antibodies (anti-PCSK9, and anti-LDLR) were purchased from Abcam (Cambridge, MA, USA). The anti-β-actin antibody was obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). The secondary antibodies were either anti-mouse or anti-rabbit HRP-linked. Blots were developed using the Pierce ECL Western Blotting Substrate (Pierce Biotechnology, IL, USA).
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3

Western Blot Analysis of LDLR Protein

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Cells were lysed with RIPA lysis buffer and proteins were harvested. Total cell protein extracts were separated by 8% SDS-PAGE gel, and then transferred onto 0.22 μm PVDF membranes (Millipore). The protein on PVDF membranes were blocked with 5% BSA-TBST at room temperature for 2 h. Then, the PVDF membranes were incubated with anti-LDLR (1:4000; abcam) and anti-GAPDH (1:4000; Sigma) antibodies at 4 °C overnight, respectively. After washed three times with TBST, the membranes were then incubated with HRP-conjugated anti-rabbit IgG (1:4000; Cell Signaling Technology) for 2 h at room temperature. The immunoreactive bands were detected using ECL reagents by Bio-rad Gel Imaging System. The protein was quantified based on the intensity of bands by the Image Lab analysis software and normalized to the internal protein GAPDH. All experiments were performed in triplicate.
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4

Lipid Metabolism Pathway Analysis

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The levels of TC (cat. no. CS0005; Sigma-Aldrich; Merck KGaA), TG (cat. no. MAK266; Sigma-Aldrich; Merck KGaA) and LDL-r (cat. no. RAB0707; Sigma-Aldrich; Merck KGaA) were measured using ELISA kits. An Oil Red O staining kit (cat. no. ab150678; Abcam) was also employed. The primary antibodies were anti-β-actin (cat. no. ab8227; 1:4,000; Abcam), anti-SRA1 (1:500; cat. no. sc-166139; Santa Cruz Biotechnology, Inc.), anti-CD36 (1:3,500; cat. no. ab133625; Abcam), anti-SREBP2 (1:3,000; cat. no. ab30682; Abcam) and anti-LDL-r (1:4,000; cat. no. ab52818; Abcam). The secondary antibodies used were Goat IgG horseradish peroxidase (HRP)-conjugated antibody (1:2,000; cat. no. HAF017; R&D Systems, Inc.) and Rabbit IgG HRP-conjugated antibody (1:2,000; cat. no. HAF008; R&D Systems, Inc.).
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5

Western blot analysis of autophagy and Alzheimer's markers

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Cell or mouse muscle and brain extracts were prepared in lysis buffer containing 50 mM Tris (pH 7.4), 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, halt proteinase inhibitor cocktail (ThermoFisher Scientific) and halt phosphatase inhibitor cocktail (ThermoFisher Scientific), and subjected to western blot analysis with anti-LC3 (Novus Biologicals, NB100-2220), anti-SQSTM1 (Abnova, H00008878-M01), anti-Aβ42 (Invitrogen; 700254), anti-APP (Biolegend; 803001), HRP-conjugated GFP antibody (Santa Cruz Biotechnology, sc9996), anti-HA (Cell Signaling Technology, C29F4), anti-ATG7 (Sigma Aldrich, A2856), anti-LDLR (Abcam, ab52818), anti-LRP1 (Abcam, ab92544), and anti-ACTB/β-actin-HRP (Santa Cruz Biotechnology, sc47778 HRP) antibodies. The band intensity was analyzed using the ImageJ software.
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6

Pulmonary protein expression analysis

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Before lung excision, the right ventricle was infused with at least 20 ml of sterile 0.9% saline to remove any residual blood in the pulmonary vasculature. Lung tissues were lysed using either nucleoprotein or cytoplasm protein extraction kit (KeyGEN BioTECH, Nanjing, China), respectively. Protein extracts were analyzed on sodium dodecyl sulfate–polyacrylamide gel electrophoresis (Bio-Rad, Hercules, CA). Primary antibodies used in the study were: Anti- phospho-NFκB p65 (Cell Signaling, Boston, MA), anti-Lamin B1 (Bioworld, Louis Park, MN), anti-β-actin (Zhongshan, Beijing, China), anti-ABCA1 (Santa Cruz Biotechnology, CA), anti-TLR2/4, anti-CYP27A1, anti-LXR-α and anti-LDLR (Abcam, Hongkong, China).
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7

Dapagliflozin Cytotoxicity and Cholesterol Assay

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Dapagliflozin was purchased from the MedChemExpress Bio-Technology company (HY-10,450). A 10 mM stocking solution was dissolved and stored at -80˚C. RPMI 1640 medium and foetal bovine serum (FBS) were purchased from Gibco, Invitrogen (Carlsbad, CA, USA). Trypsin/EDTA was purchased from HyClone (Logan, UT, USA). WST-8 cell proliferation and cytotoxicity assay kit was purchased from Dojindo (CK04, Kumamoto, Japan). A cholesterol detection assay kit was purchased from Beijing Applygen Technologies (E-1015). The phalloidine staining reagent was purchased from the Sigma-Aldrich company. Nile acid was purchased from Macklin Inc (49,409). The siRNA specific for KLF-5 was designed and provided by the Genomeditech Company (Shanghai). Reagents for real-time PCR were purchased from Takara.
Primary antibodies are detailed as follows: Anti-ABCA1 (Abcam, Cambridge, MA, UK) for WB and IHC. Anti-KLF 5 (Abclonal, China) for WB and IHC. Anti-podocin (Abcam, UK); anti-nephrin (Abcam, UK); anti-LDLR (Abcam, UK); Anti-HMGCR (Abcam, UK); Anti-podocin (Abcam, UK); anti-Bax (Abcam, UK); anti-Bcl-2 (Abcam, UK); anti-caspase 3 (Abcam, UK); and, anti-GAPDH (Proteintech, China). Rats were purchased from the Animal Experimental Centre of Shandong University. All other materials and reagents were endotoxin-free and supplied by the central lab of Shandong Provincial Hospital.
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8

Quantitative Western Blot Analysis

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Protein from tissue was isolated using a Biomasher II mortar and pestle tubes in conjunction with RIPA or TGH buffer. Protein was quantified using BCA assay. Novex NuPage 4-12% Bis-Tris gels were run for 45 minutes in MES running buffer and transferred onto nitrocellulose membranes for an hour at 4 °C in towbin’s buffer with 20% MeOH. Membranes were blocked for non-specific binding overnight in 5% milk in TBS-T. 1° Antibodies were incubated in 5% milk in TBS-T and used at the following manner: Anti-Cas9 (EnCor Biotechnology, Cat#MCA-3F, 1:2000) at room temp for 2-3 hours, Anti-Gapdh (Cell Signaling, Cat#2118L, 1:5000), Anti-LDLR (Abcam, Cat#ab52818, 1:1000), and anti-Actin (EMD Millipore, Cat#MAB1501, 1:5000) overnight at 4°C. After washing, secondary antibodies (Anti-rabbit HRP (Sigma, Cat#A6154, 1:5000) and Anti-Mouse HRP (Santa Cruz, Cat#sc-2005, 1:5000) were incubated in 3% BSA in TBS-T. Membranes were visualized using Clarity western ECL substrate (Cat#1705061) from BioRad and imaged using a BioRad ChemiDoc XRS+. For neurons, cells were lysed directly in 1X RIPA buffer and blots were incubated with goat anti-mouse 680 (Biotium, Cat#20253, 1:5000). Fluorescent immunoreactivity was imaged on a LICOR Odyssey and analyzed with LiCor Image Studio v4.0.
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9

Lipid Regulation: Simvastatin and Lunasin

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Simvastatin was obtained from Nanjing Duly Biotechnology Co., Ltd. (Nanjing, China). Lunasin was prepared in our laboratory by using recombinant DNA technology as previously described [39 (link)]. Dil-LDL was obtained from Yiyuan Biotechnologies (Guangzhou, China). Lipofectamine 3000 reagent, MEM, opti-MEM, and fetal bovine serum (FBS) were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Anti-LDLR, anti-HNF-1α, and anti-PCSK9 antibodies were purchased from Abcam (Cambridge, UK). Anti-β-actin was obtained from Cell Signaling Technology (Danvers, MA, USA). Analysis kits for TC and LDL-C were purchased from Jiancheng Biotechnologies (Nanjing, China). The 4,6-diamidino-2-phenylindole (DAPI) dye was purchased from KeyGEN BioTECH (Nanjing, China). RNAiso plus reagent, the reverse transcription kit, and SYBR® Premix Ex Taq ™II were obtained from Takara Bio (Shiga, Japan).
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10

LDLR and LOX-1 Protein Analysis

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Total protein was extracted from peripheral blood mononuclear cells (PBMCs). The proteins were separated with 10% SDS-PAGE and were then transferred to PVDF membranes (Bio-Rad). Immunoblotting was performed by using primary antibodies against LDLR (anti-LDLR; 1:1000, Abcam, Cambridge, MA, USA), anti-LOX-1 (1:1000, Abcam), and anti-GAPDH (1:5000, Santa Cruz Biotechnology, Dallas, TX, USA) and HRP-conjugated secondary antibodies against mouse or rabbit IgG (1:10000, Santa Cruz). Luminescence was detected by using the Fujifilm LAS-3000 image detection system, and image processing and data quantification were performed by using Multi Gauge v.2.02 software (FUJiFILM, Tokyo, Japan). LDLR expression levels were normalized to those of GAPDH (as a loading control), and LOX-1 expression levels were normalized to those of its proform.
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