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8 protocols using rpmi 1640

1

T-47D Breast Cancer Spheroid Protocol

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The human breast-cancer cell line T-47D (ATCC, Manassas, Virginia, United States) was routinely maintained in growth medium, composed of RPMI-1640 (Bioconcept AG, Allschwil, Switzerland), 2 mM l-Glutamine (Bioconcept AG), 10 mM HEPES (Bioconcept AG), 1 mM sodium pyruvate (Bioconcept AG), 0.02 mg ml−1 bovine insulin (Sigma-Aldrich), 1x Penicillin/Streptomycin (P/S, Bioconcept AG), and 10% fetal calf serum (FCS, Bioconcept AG) at 37°C in a humidified 5% CO2 incubator. For imaging, RPMI-1640 was replaced with RPMI-1640 without phenol-red (Bioconcept AG). T-47D constitutively expressing mKate2-labeled nuclei were generated by lenti-viral transduction with NucLightRed (Essen BioScience, Ltd., Newark, United Kingdom), followed by selection and maintenance of transduced cells in the presence of puromycin (2 μg ml−1). Multicellular spheroid generation was initiated 4 days prior to the start of the in vitro PK/PD experiment by seeding 200 cells in 50 μl of growth medium into each well of a non-adherent Akura™ 96 plate (InSphero AG). The seeding density, resulting in spheroids with diameters of 200–250 μm, was based on prior cell-seeding density titrations performed with T-47D cells (data not shown). All cell culturing was performed under standard mammalian cell culturing conditions (37°C, 95% humidity, 5% CO2).
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2

T-Cell Activation and Proliferation Assays

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For transfer of daughter cells, when confocal microscopy analysis of mitotic cells was performed or when cell proliferation was assessed, cells were cultured in T-cell medium (RPMI 1640 (Bioconcept), 2 mM L-Glutamine (Bioconcept), 2% penicillin-streptomycin (Sigma-Aldrich), 10% foetal bovine serum (Omnilab), 25 mM HEPES (Gibco, Life Technologies, Zug, Switzerland), 1× non-essential amino acids (Sigma-Aldrich), 50 µM β-Mercaptoethanol (Gibco), 1 mM sodium pyruvate (Gibco) supplemented with self-made human IL-2, and stimulated on plate-bound human Fc-ICAM-1 (50 µg/ml) (R&D Biosciences, Bio-Techne AG, Zug, Switzerland), α-CD3 (5 µg/ml) (145-2C11, BioLegend) and α-CD28 (5 µg/ml) (37.51, BioLegend) for 30–36 h. mTOR modulation was done by adding 20 nM of rapamycin (Santa Cruz, LabForce AG, Muttenz, Switzerland) or 1–2 µM of Akt-kinase inhibitor (Sigma-Aldrich) 12 h post stimulation. For adoptive transfer, 1 × 104 purified CD45.1 P14 cells (stimulated as indicated) were intravenously injected into naive C57BL/6 CD45.2 recipient mice. For cell proliferation assays, cells were stained with CellTrace VioletTM, CellTrace YellowTM or CellTrace VioletTM (Life Technologies) following manufacturer’s instructions prior to stimulation.
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3

Memory CD8+ T Cell Expansion

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CD45.1 TCR-transgenic, OVA257–264-specific (OT-I) CD8+ T cells were adoptively transferred into congenic CD45.2 WT C57BL/6 mice. Mice were primed with VV-OVA. At least 30 d after transfer, once an OVA-specific memory T cell pool had been established, mice were sacrificed and lymphocytes were isolated from the spleen as described before. Cell surface staining was performed with the following antibodies: anti-CD8α (53–6.7), anti-CD45.1 (A20). Cells were sorted for CD8+ CD45.1+ using a BD FACSAria Sorter. 105 sorted memory cells/well were cultured in T cell complete medium (RPMI 1640 [BioConcept], 2 mM l-glutamine [BioConcept], 2% penicillin/streptomycin [Sigma-Aldrich], 10% FCS [Gibco], 25 mM HEPES [Pan Biotech], 1× nonessential amino acids [Sigma], 50 µM β-mercaptoethanol [Gibco], 1 mM sodium pyruvate [Gibco]) round-bottom 96-well plates. Cells were cultured in the presence of 100 ng/ml IL-7 (eBioscience) and 100 ng/ml IL-15 (eBioscience). Memory bystanders were either exposed to medium only or 0.25 µg/ml, 0.5 µg/ml, or 1 µg/ml of rIL-6 for 3 d or 6 h (recombinant mouse IL-6 [carrier-free]; BioLegend).
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Ovarian Cancer Cell Line Culture

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The cell lines OVAR-5 (RRID:CVCL_1628), and OVCAR-3 (ATCC HTB-161) were commercially obtained from the American Tissue Culture collection, (Manassas, MA, USA). OVCAR-3 were cultured in RPMI-1640 (BioConcept) supplemented with 20% FCS, 1% non-essential amino acids (MEM-NEAA, BioConcept), and 1% GlutaMAX. OVCAR-5 were cultured in DMEM supplemented with (v/v) 10% FCS, 1% MEM-NEAA, and 1% GlutaMAX. In viability assays, 1% Penicillin/Streptomycin (BioConept) was added to the media. All cell lines were kept at 37 °C in a humidified atmosphere with 5% CO2.
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5

Culturing Human Cervical Cancer Cell Lines

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The CaSki, HeLa and C33A human cervical cancer cell lines were purchased from the Bioresource Collection and Research Center. CaSki cells were cultured in RPMI-1640 (BioConcept AG) and HeLa and C33A cells were cultured in Eagle's minimum essential medium (MEM; HyClone: Cytiva) supplemented with 10% fetal bovine serum (FBS; HyClone: Cytiva) in a humidified incubator at 37°C with 5% CO2, respectively.
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6

Colonic Epithelial Cell Isolation

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Colonic tissue was separated into anatomical segments according to rectosigmoid and descending colon (distal to proximal) and muscle layers stripped from mucosa. Mucosa was minced and digested with collagenase D (1mg/ml) and DNase I (4µg/ml, both Roche Diagnostics, Basel, Switzerland) in complete medium (RPMI 1640 (BioConcept AG, Allschwil, Switzerland) supplemented with 10% FCS, 1% Penicillin-Streptomycin, 0.5µg/ml amphotericin B, 80µg/ml gentamicin, 10mM Hepes) at 37°C for 1h under vigorous shaking. Digestion suspension was filtered through a 100µm-cell strainer, and cells were washed in complete medium. Suspension cells were resuspended in 20% Percoll (Merck, Darmstadt, Germany) and underlaid with 40% Percoll (3ml of each). Epithelial cells were purified from the 20%/40% Percoll interface. Cells were washed and used freshly for Fluorescence-activated cell sorting (FACS) analysis or immediately resuspended in RLT Lysis buffer and cryo-stored until further analysis.
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7

EGFP Reporter Cell Line for NY-ESO Targeting

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Tap-deficient T2 (174x CEM.T2) cells and HEK293T cells were purchased from ATCC and maintained in RPMI 1640 (BioConcept) supplemented with 10% fetal calf serum (FCS; HyClone), 2 mM L-glutamine and 1% Penicillin/Streptomycin at 37°C and 5% CO2. The EGFP reporter cell line was based on a murine TCR negative thymoma cell line derived from strain BW5417 (ATCC®TIB-47TM) and was stably transduced with (i) TCR NY-ESOc259 (International Patent Application Publication No. WO2017044672A1) in which the human constant regions were replaced with those of mouse, (ii) a chimeric mouse/human CD8 as well as (iii) an EGFP reporter construct linked to a minimal IL-2 promoter comprising three NFAT-binding sites (3xNFAT) (23 (link)). The transduced cells were termed NY-ESOc259 AKD10R3 cells and will be called effector cells below. Mouse cell lines were cultured in SF-IMDM (BioConcept) supplemented with 3% FCS, 1% Penicillin/Streptomycin, and 50 μM beta-mercaptoethanol at 37°C and 10% CO2.
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8

Cell Culture Maintenance Protocol

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HeLa and Histone H2B-GFP expressing HeLa, and MCF-7 human breast carcinoma cell lines were routinely subcultured in DMEM with 1× GlutaMAX-I (4.5 g L -1 glucose; Gibco) supplemented with 10% fetal bovine serum (FBS; BioConcept). A549 human lung carcinoma and THP-1 human leukemia monocytic cell lines were cultured in RPMI-1640 (BioConcept) supplemented with 10% FBS and 1× GlutaMAX (Gibco). All cells were cultured at 37 °C in a humidified atmosphere with 5% CO 2 up to 25 passages. For incubation with MCMs, media were supplemented with 1× penicillin-streptopmycin (Gibco).
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