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24 protocols using sphereclone

1

Quantification of Organic Acids by UFLC-PDA

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Organic acids were determined by ultra-fast liquid chromatography (UFLC, Shimadzu 20A series, Shimadzu Corporation, Kyoto, Japan) coupled with a photodiode array detector (PDA), which used 215 nm and 245 nm as preferred wavelengths. Samples were subjected to metaphosphoric acid extraction, as previously described by Barros, Pereira and Ferreira [22 ]. A SphereClone (Phenomenex, Hauppauge, NY, USA) reverse phase C18 column (5 μm, 250 × 4.6 mm i.d) was used at 35 °C to perform the chromatographic separation and the mobile phase used was sulphuric acid at 3.6 mM using a flow rate of 0.8 mL/min. Quantification of organic acids was done by comparing the area of their peaks with the commercial standards of each compound, using LabSolutions Multi LC-PDA software (Shimadzu Corporation, Kyoto, Japan). Quantification was achieved by comparing the area of organic acid peaks from the different samples with calibration curves obtained from commercial standards. The results were expressed in g 100 g−1 of DW.
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2

Quantification of Organic Acids in Samples

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Organic acids were determined following a procedure previously described by the authors [29 (link)]. The analysis was performed using a Shimadzu 20A series UFLC (Shimadzu Corporation, Kyoto, Japan). Separation was achieved on a SphereClone (Phenomenex, Torrance, CA, USA) reverse phase C18 column (4.6 × 250 mm, 5 μm), thermostatted at 35 °C. The elution was performed with sulfuric acid 3.6 mM using a flow rate of 0.8 mL/min. Detection was carried out in a PDA, using 215 nm and 245 nm (for ascorbic acid) as preferred wavelengths. The organic acids found were quantified by comparison of the area of their peaks with calibration curves obtained from commercial standards of each compound. The results were expressed in g per 100 g of dry weight (dw).
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3

Quantifying Organic Acids in Flowers

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For organic acids extraction, 1 g of flower samples was extracted with 25 mL of metaphosphoric acid at 4.5% solution, that was then filtered (0.22-µm disposable filters), for further analysis. Organic acids were analysed by ultra-fast liquid chromatography (UFLC), as previously described by Pereira et al. (2013) [17 (link)], through a UFLC system, in the following operating conditions: system: Shimadzu 20 A series UFLC (Shimadzu Corporation, Kyoto, Japan); column: SphereClone (Phenomenex, Torrance, CA, USA) reverse phase C18 column (5 μm, 250 mm × 4.6 mm i.d.); detector: PDA Shimadzu detector; mobile phase: 3.6 mM sulphuric acid; flux: 0.8 mL/min; wavelength: 215 nm; temperature: 35 °C; software: LabSolutions, LCsolutions Version 1.25.
Alongside this, the quantification of the detected organic acids, was carried out by comparing the area of the peaks with the calibration curves obtained from commercial standards of each of the compounds, and the results were expressed in g per 100 g of dry weight (dw).
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4

Quantification of Organic Acids via UFLC

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Organic acids were determined following a procedure previously optimized and described by the authors [10 ]. Analysis was performed on a Shimadzu 20A series ultra-fast liquid chromatograph (UFLC, Shimadzu Cooperation, Kyoto, Japan) coupled to photodiode array detector (PDA, Shimadzu), using 215 nm and 245 nm as the preferred wavelengths. Separation was achieved on a SphereClone (Phenomenex, Torrance, CA, USA) reverse phase C18 column (5 μm, 250 mm × 4.6 mm i.d) thermostatted at 35°C. Analytes were eluted with 3.6 mM sulphuric acid at a flow-rate of 0.8 mL/min. The organic acids found were quantified by comparison of the area of their peaks recorded at 215 nm or 245 nm (for ascorbic acid) with calibration curves obtained from commercial standards of each compound: oxalic acid (y = 1x107x + 96178; R2 = 0.999); quinic acid (y = 601768x + 8853.2; R2 = 1); malic acid (y = 952269x + 17803; R2 = 1); shikimic acid (y = 8x107 + 55079; R2 = 0.999). The results were expressed in mg per g of lyophilized decoction or infusion.
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5

Analytical Characterization of Organic Compounds

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Optical rotations were measured on a JASCO P-2000 polarimeter (JASCO, Easton, MD, USA). IR data was collected using a Bruker Alpha Fourier transform infrared spectrophotometer (Bruker, Billerica, MA, USA). NMR spectra were measured at 1H resonance frequency on a Jeol Eclipse + 400 MHz spectrometer (JEOL, Peabody, MA, USA). Chemical shifts were calibrated internally to the residual signal of deuterated chloroform (CDCl3 δH 7.26, δC 77.0). For NMR measurements concentration used was in the range of 3–8 mg of compound (depending on the amount of compound available) dissolved in 600 μL of deuterated chloroform. High-resolution mass spectra were obtained on a Bruker micrOTOF-Q III (Bruker Daltonics, Billerica, MA, USA). HPLC separations were performed using an Agilent 1200 HPLC system equipped with a quaternary pump, a diode array detector (Agilent, Santa Clara, CA, USA) and a normal phase silica gel column (Phenomenex Sphereclone®, 4.6 mm × 100 mm, 5 µm). Reverse phase solid phase extraction (SPE) separation was carried out using SUPELCO Supelclean™ LC-18 (C-18, octadecyl) solid-phase extraction cartridges (Supelco® Analytical, Bellefonte, PA, USA).
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6

Quantitative Analysis of Organic Acids

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Metaphosphoric acid (4.5%) was added to 1 g of the sample; the mixture was then protected from light and incubated (with agitation) for 20 min at room temperature. After sample filtration, organic acids were determined using a Shimadzu 20A series UFLC (Shimadzu Corporation, Kyoto, Japan) coupled to photodiode array detector (PDA) [39 (link)]. Separation was achieved on a SphereClone (Phenomenex, Torrance, CA, USA) reverse phase C18 column (5 μm, 250 mm × 4.6 mm i.d—internal diameter.) thermostatted at 35 °C. The elution was performed with sulphuric acid (3.6 mM) using a flow rate of 0.8 mL/min. Detection was carried out in a PDA using 215 and 245 nm (for ascorbic acid) as preferred wavelengths. For the quantitative analysis, calibration curves with known concentrations of commercial standards were constructed, and the organic acids present in the two samples were determined by peak area comparison at 215 nm and 245 nm (for ascorbic acid). The results were expressed in g per 100 g dw.
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7

Organic Acid Profiling of Dehydrated Fruits

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The dehydrated and powdered fruits and stems were investigated for their organic acid composition following the protocol established by the group [37 (link)]; an ultra-fast liquid chromatography coupled to photodiode array detector (UFLC-PDA; Shimadzu Coperation, Kyoto, Japan) was used. The separation of the compounds was performed in a SphereClone (Phenomenex) reverse phase C18 column (5 μm, 250 × 4.6 mm i.d) thermostated at 35 °C, using 3.6 mM sulphuric acid solution as eluent in a flow rate of 0.8 mL/min. The quantification was achieved by comparison of the peak area recorded at 215 nm as the preferred wavelength. For quantitative analysis, a calibration curve with known concentration (10 − 0.0078 mg/mL) for each available compound was built based on the UV signal: oxalic acid (y = 45.973 + 9 × 10 x; R2 = 0.9901); quinic acid (y = 46.061 + 610607 x; R2 = 0.9995); malic acid (y = 92.665 + 912,441 x; R2 = 0.999); citric acid (y = 45.682 + 1 × 106x, R2 = 0.9997), and succinic acid (y = 50.689 + 592888 x; R2 = 0.9996). The results were expressed in g per 100 g of fruits and stems dry weight.
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8

HPLC Analysis of Organic Acids

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Organic acids were determined following a procedure previously described [15 (link)]. The analysis was performed using a Shimadzu 20A series UFLC (Shimadzu Corporation, Kyoto, Japan). Separation was achieved on a SphereClone (Phenomenex, Torrance, CA, USA) reverse phase C18 column (5 μm, 250 mm × 4.6 mm i.d.) thermostated at 35°C. The elution was performed with sulfuric acid (3.6 mM) using a flow rate of 0.8 mL/min. Detection was carried out in a PDA (photodiode array detector), using 215 and 245 nm (for ascorbic acid) as preferred wavelengths. The organic acids found were quantified by comparison of the area of their peaks recorded at 215 nm with calibration curves obtained from commercial standards of each compound. The results were expressed in mg per g of dry weight.
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9

Curcumin Conjugation via Carbodiimide Activation

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An oven-dried round bottom flask, equipped with magnetic stirrer and 3 Å molecular sieves, was flushed with argon and charged with alkyl succinate (207 mg, 1.3 mmol, 10 equiv.), pyridine (3 mL), 4-dimethylaminopyridine (366 mg, 0.39 mmol, 3 equiv.), and 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide hydrochloride (75 mg, 0.39 mmol, 3 equiv.). The reaction was stirred for 4 h at RT. Concurrently, a solution of curcumin (1) (50 mg, 0.13 mmol) in pyridine (3 mL) was stirred for 4 h at RT. The curcumin solution was then added to the alkyl succinate reaction allowed to stir for 48 h at RT. The reaction mixture was diluted with a 0.5 M aqueous solution of Na2CO3/brine (1:1, 10 mL), and the aqueous layer extracted with ethyl acetate (EtOAc) (3×10 mL). The combined organic phases were dried over Na2SO4, filtered, concentrated under reduced pressure, and purified by preparative HPLC using normal phase silica gel column (Phenomenex, Sphereclone, 250×10mm, 5μm) with an n-hexane to ethyl acetate gradient system in 20 min at 2 mL/min to obtain the desired products.
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10

Chondroitin Sulfate Disaccharide Analysis

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L. vannamei samples, chondrotin sulphate A and chondrotin sulphate C (50 µg) were subject to exhaustive digestion by chondroitin ABCase (Sigma, Dorset, UK) in 50 mM Tris-HCl containing 60 mM sodium acetate and 0.02% w/v BSA at pH 8. Samples were incubated at 37 °C for 4 h prior to a subsequent addition of further chondroitin ABCase and incubation at 37 °C overnight. A SphereClone analytical column (4.6 × 250 mm, Phenomenex, Macclesfield UK), was pre-equilibrated in HPLC-grade H2O, pH 3.5 (1 mL·min−1) prior to the injection of the digested samples. The flow was held isocratic in H2O for 10 min prior to a linear gradient from 0 to 2 M NaCl, pH 3.5 (HPLC grade; VWR, Lutterworth, UK) over 60 min. Detection of eluted Δ-disaccharides was carried out by monitoring UV absorbance at λ = 232 nm. Retention times were correlated against the 4 most common Δ-disaccharide reference standards for CS according to [40 (link)] (Iduron, Manchester, UK). The SphereClone column was washed with 2 M NaCl pH 3.5 and HPLC-grade H2O pH 3.5 prior to use and between runs.
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