The largest database of trusted experimental protocols

16 protocols using 27 g needle

1

Silkworm Infection Assay with M. smegmatis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The assay for silkworm infection with M. smegmatis was performed according to our established method [11 (link)]. Hatched silkworm larvae (Ehime Sansyu, Ehime, Japan) were raised by feeding Silk Mate 2S (Nihon Nosan Kogyo, Kanagawa, Japan) in an incubator at 27 °C until the fourth molting stage. On the first day of fifth-instar larvae, silkworms (n = 5) were fed Silk Mate 2S. On the second day, M. smegmatis (2.5 × 107 CFU/larva in 50 μL Middlebrook 7H9 broth) was injected into the hemolymph through the dorsal surface of the silkworm using a disposable 1-mL syringe with a 27-G needle (TERUMO, Tokyo, Japan). A sample solubilized in 50 μL of 10% DMSO was injected to the hemolymph within 1 h of infection with M. smegmatis. All M. smegmatis-infected silkworms died within 41 h when no sample was administered. After sample injection, the number of silkworms that survived was counted at the indicated time until 70 h. The survival rate at the indicated dose of each sample was calculated when all M. smegmatis-infected silkworms without sample injection had died (41 h). The ED50 values (at 41 h after infection) were calculated according to a previous method [12 (link),15 (link),22 (link)].
+ Open protocol
+ Expand
2

Immunoprecipitation and Protein Interaction Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were transiently transfected with the VPS gene expression plasmids with PEI max. The total amount of plasmid DNA introduced was adjusted to the same using pcDNA3.1 empty vector (Thermo Fisher). After 48 h, cells were washed twice with cold PBS and then resuspended with 1 mL of PBS supplemented with a protease inhibitor cocktail (Roche, #11873580001). Cells were homogenized by passing a 27G needle (TERUMO) 20 times on ice and centrifuged at 15,000 rpm for 10 min at 4 °C. The protein concentration of the cleared lysate was determined by Bradford assay (QuickStart Dye reagent, Bio-Rad, #500-0205). Equal amounts of proteins among samples were used for the immunoprecipitation experiment. The lysate was incubated with anti-Myc (MBL, #M192-3), anti-HA (GeneTex, #GTX18181), or anti-VPS8 (Proteintech, #15079-1-AP) antibody on ice for 1 h and then cleared by centrifugation again. Protein G magnetic beads (Cytiva, #28951379) were added and incubated at 4 °C with rotation overnight. The beads were washed with cold PBS 4 times, and bound proteins were eluted with 2 × SDS sample buffer with heating at 95 °C for 5 min. Resultant eluates were analysed either by immunoblotting or mass spectrometry.
+ Open protocol
+ Expand
3

Fluorescent Markers for Tracking Bacterial Infection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fifteen mice were divided into five groups: 1) subcutaneously PBS-injected group immediately after intravenous PBS injection from the tail vein (negative control) (n = 3), 2) alizarin complexone (alizarin; Dojindo, Kumamoto, Japan) -injected group (n = 3), 3) calcein (Sigma-Aldrich) -injected group (n = 3), 4) tetracycline hydrochloride (tetracycline; FUJIFILM Wako Pure Chemical Corp., Osaka, Japan)-injected group (n = 3), and 5) demeclocycline hydrochloride (demeclocycline; Sigma-Aldrich, St. Luis, MO, USA) -injected group (n = 3) (Figure 1A). Later four groups received subcutaneous injections of fluorescent reagents using a 27 G needle and a 1 ml syringe (Terumo Corporation, Tokyo, Japan) at a dose of 20 mg/kg immediately after intravenous S. mutans inoculation to the tail vein. All mice were sedated and then sacrificed by cervical dislocation 24 hrs after intravenous PBS injection or S. mutans inoculation. The mice were immersed in 70% ethyl alcohol for several seconds, and then right femurs and liver were dissected for bacteriological analyses. The comparison between alizarin and PBS subcutaneous injections on the colony formation was shown in the Supplementary Section.
+ Open protocol
+ Expand
4

Silkworm Infection Survival Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hatched silkworm larvae were raised by feeding an artificial diet containing antibiotics (Silk Mate 2S) in an incubator at 27 °C until the fourth molting stage. On the first day of fifth-instar larvae, silkworms (n = 5) were fed Silk Mate 2S. On the second day, mycobacterial suspensions (6.0 × 107 to 7.0 × 108 CFU/larva) were injected into the hemolymph through the dorsal surface of the silkworm using a disposable 1-mL syringe with a 27-G needle (TERUMO, Tokyo, Japan). After injection, the number of silkworms that survived was counted at the indicated time until 80 h. The data are plotted according to the Kaplan–Meier method [30 (link)].
+ Open protocol
+ Expand
5

Oocyte Maturation and Manipulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Oocytes were obtained from ovaries 44–48 hr following intra‐peritoneal injection of 5 international units (IU) of pregnant mare's serum gonadotropin (PMSG; Pacificvet) as described before (Gui & Homer, 2012, 2013; Homer, Gui, & Carroll, 2009; Wei, Greaney, Zhou, & Homer, 2018; Zhou, Hancock, Khanna, & Homer, 2019). Following humane euthanasia, ovaries were dissected and antral follicles were punctured using a 27 G needle (Terumo) under direct vision of a stereomicroscope (SMZ‐800N; Nikon) to release oocytes into pre‐warmed αMEM HEPES‐buffered medium supplemented with 50 μM 3‐isobutyl‐1‐methylxanthine (IBMX; Sigma), which prevents oocytes from undergoing GVBD. To study maturation, oocytes were allowed to resume meiosis by culturing them in micro‐drops of IBMX‐free M16 culture medium (Sigma) under embryo‐tested mineral oil (Sigma) at 37°C in an atmosphere of 5% CO2 and 5% O2. Generation of histone 2B (H2B)‐RFP cRNA (250 ng/µl) and microinjection into GV‐stage oocytes was performed as described previously (Subramanian et al., 2020; Wei et al., 2018; C. Zhou et al., 2019).
+ Open protocol
+ Expand
6

Regulation of Inflammatory Cytokine Secretion

Check if the same lab product or an alternative is used in the 5 most similar protocols
C2C12 myotubes were treated with DMSO (0.1% vol/vol) or TAK-242 (1 μM) and then with PBS or LPS (1 μg/mL) 1 h later. After 4 h cell culture, media were collected and centrifuged at 3000 rpm for 10 min at 4 °C. The supernatant was removed and stored at −80 °C until tested.
Mice were injected with vehicle or TAK-242 (3 mg/kg) and then with PBS or LPS (1 mg/kg) 1 h later. After 4 h, mice were anaesthetised by the i.p. injection of medetomidine (0.003%; Domitor, Nippon Zenyaku, Koriyama, Japan), midazolam (0.04%; Dormicum, Astellas Pharma, Tokyo, Japan), and butorphanol tartrate (0.05%; Vetorphale, Meiji Seika Pharma, Tokyo, Japan) dissolved in sterile 0.9% NaCl. Blood samples were withdrawn from the inferior vena cava using a 27 G needle (Terumo, Tokyo, Japan) into EDTA tubes, which were centrifuged at 3000 rpm for 15 min at 4 °C. The plasma layer was removed and stored at −80 °C until tested.
IL-6 and TNF-α concentrations in culture supernatant and plasma were determined using mouse IL-6 and TNF-α ELISA kits (Proteintech, Rosemont, IL), respectively, according to the manufacturer’s protocol. Absorbance at 450 nm was measured using a spectrophotometer (Thermo Fisher Scientific).
+ Open protocol
+ Expand
7

In Vivo Tracer Experiments in Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tracer experiments were performed as previously described (39 (link)) with some modifications. Six- to 8-week-old C57BL/6 WT mice were intravenously injected with 200 µl of the following tracer reagents with a 27G needle (Terumo, Tokyo, Japan): 2 mg ml−1 EZ-Link™ Sulfo-NHS-SS-Biotin (MW: 607, Pierce Chemical, Dallas, TX, USA) in PBS containing 1 mM CaCl2 or 175 mg ml−1 tetramethylrhodamine-conjugated S1P (MW: 807, Echelon Biosciences, Salt Lake City, UT, USA) in methanol/PBS containing 1 mM CaCl2. In the analysis of Cld5−/− mice, Cld5+/− intercross littermates were obtained at E18.5 and were injected with 20 µl of 2 mg ml−1 EZ-Link™ Sulfo-NHS-SS-Biotin in PBS containing 1 mM CaCl2 via the facial vein route with a 33G needle (Hamilton, Reno, NV, USA). Thymi were examined by immunohistochemistry 20 min after the injection of a biotin tracer and 5–30 min after the injection of tetramethylrhodamine-conjugated S1P, respectively.
+ Open protocol
+ Expand
8

Ovarian Tissue Vitrification Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The ovarian tissue vitrification was carried out using a needle immersion vitrification protocol described previously [9 (link)] with slight modification. Briefly, ovarian tissues were threaded onto a 27 G needle (5–6 pieces per needle; Terumo Corporation, Tokyo, Japan) with space between each piece. The needles that pierced the tissue were rinsed in KAv-1 medium at first and immersed in equilibration solution consisting of 7.5% dimethyl sulfoxide (DMSO) and 7.5% ethylene glycol (EG) in KAv-1 medium for 10 min at 4 °C. The needles were subsequently moved into vitrification solution consisting of 15% DMSO, 15% EG, and 0.5 M sucrose in KAv-1 for 10 min at 4 °C. Then, after excess solution was absorbed quickly with a Kimwipe, the needles were plunged into liquid nitrogen directly, inserted into a cryovial (Watson, Tokyo, Japan) containing liquid nitrogen, and stored for at least 1 week.
For warming, needles holding tissue pieces were taken out of the cryovial in liquid nitrogen and immediately transferred into a washing gradient solution. The vitrified tissues held by the needles were washed in gradient solution (KAv-1 supplemented with 1, 0.5, 0.25, and 0 M sucrose) for 5 min at each step at 37 °C. The ovarian tissues were then removed from the needles for further assessment.
+ Open protocol
+ Expand
9

Quantification and Visualization of LEDGF Hybrids

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein concentration of 1% SDS (AppliChem, Leuven, Belgium) protein extracts sheared with a 27 G needle (Terumo, Leuven, Belgium) was determined using a bicinchoninic acid (BCA) protein assay (Pierce, Aalst, Belgium). Proteins were separated on a 12.5% w/v SDS-polyacrylamide gel and transferred to a polyvinylidene difluoride membrane (PVDF; BioRad) using an XCell SureLock electrophoresis system (Invitrogen). LEDGF-hybrids were detected using 1/2.000 polyclonal rabbit anti-LEDGF480–530 antibody (A300-848a; Bethyl Laboratories-Imtec Diagnostics N.V., Antwerpen, Belgium) and 1/5 000 secondary antibody (polyclonal goat anti-rabbit antibody coupled with horse radish peroxidase (HRP); Dako). Chemiluminescence was measured using a ECL plus western blotting detection kit (Amersham Biosciences, Roosendaal, The Netherlands). Equal loading was verified with a primary monoclonal antibody directed to α-tubulin (mouse, 1/10 000, 1 h at room temperature; T5168, Sigma-Aldrich) and secondary antibody in blocking buffer (1/10 000, polyclonal goat-anti mouse labelled with HRP; Dako). Visualization was done by chemiluminescence (Pierce ECL Western Blotting Substrate, Thermo scientific).
+ Open protocol
+ Expand
10

Orexin Modulates Cytokine Responses in Endotoxemia

Check if the same lab product or an alternative is used in the 5 most similar protocols
To investigate the effects of peripherally or centrally administered orexin on cytokine production in mice with endotoxin shock, orexin was administered as described above. Monitoring body temperature, the blood and brain were sampled at 4 hr or 22 hr after LPS injection. For sampling the blood and brain, mice were anesthetized with isoflurane. Blood was sampled from the left ventricle using a 27 G needle (Terumo, Japan) with heparin or EDTA-2Na, and was centrifuged at 3000 rpm for 15 min. The supernatants were sucked-up as blood plasma or serum. Removed brains were frozen in liquid nitrogen and were stored at −80°C.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!