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9 protocols using pe conjugated anti cd133

1

Multiparametric analysis of stem cell markers

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2x106 cells were collected and stained with 20 μ of phycoerythrin (PE)-conjugated anti-CD24, anti-Sox2, anti-Oct3/4, and anti-Nanog antibodies, or fluorescein isothiocyanate (FITC)-conjugated anti-CD44 (BD Biosciences), or with PE-conjugated anti-CD133 (Miltenyi Biotech), or co-stained with FITC-conjugated anti-CD44 antibodies and PE-conjugated anti-CD24 or PE-conjugated anti-CD133. In the process of staining for Sox 2, Oct3/4 and Nanog, BD Perm/Wash buffer (BD biosciences) was used according to the manufacturer's instructions. PE- or FITC-positive cells were quantified on a LSRII flow cytometer (BD Biosciences), and up to 5x104 cells were counted per run.
For the bromodeoxyuridine (BrdU) incorporation assay, 10 μM BrdU was added to the cell suspension 2 hours before collection. Cells were then fixed with cold 70% ethanol, and labeled with a FITC-conjugated anti-BrdU monoclonal antibody according to the manufacturer's instructions (BD Biosciences). Propidium iodide was added before flow cytometric analysis. Detection of BrdU incorporation in DNA synthesizing cells was conducted by flow cytometry.
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2

Multiparametric Flow Cytometry Analysis

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Briefly, 1 × 106 cells were incubated with 100 μl of 3 % BSA in PBS for 1 h on ice, then labeled with PE-conjugated anti-CD133 (Miltenyi Biotec, Germany), anti-CAGE (Abcam, Cambridge, UK) antibody bound to an Alexa-488 secondary antibody for 1 h. After washing three times with PBS, labeled cells were analyzed using flow cytometry using a FACSCalibur (BD Biosciences, USA)
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3

Cell Surface Marker Detection

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For cell surface markers detection, phycoerythrin (PE)-conjugated anti-CD133 (Miltenyi Biotec GmbH, Germany) and PE-conjugated anti-RANK (Abcam Inc, USA) were used. The procedure of staining was done according to the manufacturer’s instructions. PE-conjugated mouse IgG1 isotype control antibody (Miltenyi Biotec GmbH, Germany) was used for each sample -as a negative controlto block nonspecific binding sites. After labelling, all samples were analyzed by a flow cytometer (FACSCalibur, Becton-Dickinson) in Royan Institute (Tehran, Iran). The results were analyzed by using flowjo7.6.1 software (Tree star, USA).
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4

Characterization of Cancer Stem Cells

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For the analysis of CD44 positive and CD133 positive cells, cells were stained with PE-conjugated anti-CD133 (Miltenyi Biotec) and APC-conjugated anti-CD44 (BD) antibody.
For apoptosis analysis, cells were stained with Annexin V-FITC Apoptosis Kit (K101, Biovision, Milpitas, CA, USA) according to the manufacturer’s instructions.
After the indicated labeling, cells were analyzed with MoFlo Astrios (Beckman-Coulter, CA, USA).
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5

FACS Isolation and Cell Cycle Analysis of Cancer Stem Cells

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The phycoerythrin (PE)-conjugated anti-CD133 (Miltenyi Biotec), allophycocyanin-conjugated anti-CD44 (BD), PE-conjugated anti-CD24 (BD), or FITC–anti-EpCAM (EMD Millipore) antibodies were used for FACS analysis. To obtain CD133+CD44+ or CD133CD44 cells, xenografted tumor cells stained with PE-conjugated anti-CD133 and APC-conjugated anti-CD44 antibody (both 1:40) were subjected to cell sorting performed by the FACS. For cell cycle analyses, cells were incubated with 20 µM BrdU (Sigma-Aldrich) for 2 d, prepared as previously described (Tardat et al., 2007 (link)), and incubated for 30 min with PE-conjugated anti-BrdU antibody (R&D Systems).
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6

Quantifying Colorectal Cancer Stem Cells

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CD133 is a marker of colorectal cancer stem cells (CSCs) (Dalerba et al. 2007 ). To assess the prevalence of CD133-positive cells in the population, cells were treated with 5FU, OXA or co-treatment for 48 h, followed by medium changing and culturing in DFM. The percentage of CSCs was analyzed after 15d at this condition. Briefly, cells were dissociated and washed once with PBS 1x containing EDTA 2 mM and 0.5% of BSA for 1h. After this, cells were incubated with PE-conjugated anti-CD133 (Miltenyi Biotec, Germany) 1:100 (v/v), for 10 min. Finally, cells were washed once with incubation buffer, resuspended, and analyzed by flow cytometry.
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7

Notch Pathway Inhibition in Cancer

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5-FU, dimethyl sulfoxide (DMSO), and N-[N-(3,5-difluorophenacetyl)-L-alanyl]-(S)-phenylglycine-t-butyl ester (DAPT) were purchased from Sigma-Aldrich (St. Louis, MO, USA). αM was provided by professor SY Seo (College of Pharmacy, Gachon University, Republic of Korea) (Fig. 1A). 5-FU and αM were dissolved in DMSO. The following antibodies were used for Western blotting and flow cytometry: anti-β-actin (1:1000, Gene Tex, Irvine, USA), anti-HES1 (1:1500, Cell Signaling, Danvers, MA, USA), anti-Notch1, anti-NICD 1 (1:100, Santa Cruz, TX, USA), anti-Hey1 (1:500, abcam, Cambridge, UK), fluorescein (FITC)-conjugated anti-CD44 (1:20, BD bioscience, Franklin Lakes, NJ), and phycoerythrin (PE)-conjugated anti-CD133 (1:50, Miltenyi Biotec, Bergisch Gladbach, Germany).
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8

Antibody Validation for Stemness Markers

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Anti-CD133 (catalog no. 130-090-853) and PE conjugated Anti-CD133 antibodies were purchased from Miltenyi Biotec. YTHDF2 (catalog no. 80014), SOX2 (catalog no. 23064S), AXIN2 (catalog no. 20540-1-AP) and c-MYC (catalog no. 2276S) antibodies were from Cell Signaling Technology. Anti-E2F3 (catalog no. 27615-1-AP) and IGF2BP2 (catalog no. 11601-1-AP) antibodies were from Proteintech. Anti-digoxin (catalog no. ab51949) antibody was obtained from Abcam. β-actin (catalog no. RM2001) antibody was purchased from Beijing Ray antibody Biotech. ZIC2 (catalog no. ARP35821_P050) antibody was purchased from Aviva Systems Biology. Alexa-594-, Alexa-488-and Alexa-647-conjugated anti-rabbit and anti-mouse secondary antibodies were purchased from Invitrogen. HRP-conjugated secondary antibody was purchased from Sungene Biotech. Polymer HRP and AP detection kits were from GBI labs. Biotin labeld RNA mix (catalog no. 11685597910) was from Rhoche. Chemiluminescent nucleic acid detection module (catalog no. 89880) was from Thermo Scientific. ChIP assay kit (catalog no. 17-295) was from Miltenyi Biotec. Supplements N2 and B27 were purchased from Life Technologies.
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9

Flow Cytometry Analysis of CD133+ A549 Cells

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For flow cytometry, single-cell suspensions of A549 cells were incubated with the appropriate dilution of an isotype control or specific antibody. The antibodies used were PE-conjugated anti-CD133 or APC-conjugated anti-CD133 from Miltenyi Biotec (Bergisch Gladbach, Germany). After a 45-min incubation with primary antibodies, the cells were washed before analysis and sorting using a BD LSRII Flow Cytometer (BD Biosciences, San Jose, CA, USA). Sorted CD133 + and CD133 -A549 cells were cultured in DMEM supplemented with 10% fetal bovine serum (Biological Industries).
For the annexin V/propidium iodide (PI) assays, cells were stained with 10 µL annexin V-FITC and 10 µL PI (5 μg/mL) and stirred slowly for even mixing. Cells were placed in a dark room at room temperature for approximately 30 min and then 300 µL binding buffer were added (10 mM HEPES, pH 7.4, 140 mM NaOH, 2.5 mM CaCl 2 ). The cells were analyzed via flow cytometry and early apoptotic (annexin V-positive, PI-negative), late apoptotic (annexin V-positive and PIpositive), and dead (annexin V-negative and PI-positive) cells were counted to determine apoptosis and cell death.
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