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Axioobserver z1 stand

Manufactured by Zeiss
Sourced in Germany

The AxioObserver Z1 stand is a high-quality microscope platform designed for a variety of research and imaging applications. It features a stable and precise optical system, allowing for reliable and accurate observations. The stand's core function is to provide a stable and adjustable base for the microscope components, enabling users to conduct their research or imaging tasks effectively.

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9 protocols using axioobserver z1 stand

1

Murine Lung Organoid Culture Protocol

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Organoids were cultured as previously described [3 (link),35 (link)]. Briefly, MLg (ATCC CCL-206) mouse lung fibroblasts were proliferation-in-activated with 10 μg/ml mitomycin C (Merck, Darmstadt, Germany) for 2 h. 20.000 primary mouse ATII cells were resuspended in 50 μl media and diluted 1:1 with 20.000 MLg cells in 50 μl growth factor reduced Matrigel (Corning, New York, USA). Cell mixture was seeded into 24-well plate 0,4 μm trans-well inserts (Corning, New York, USA). Cultures were treated at day 0 and every 2nd or 3rd day in DMEM/F12 containing 100 U/ml penicillin and 100 μg/ml streptomycin, 2mM L-alanyl-l-glutamine, Amphotericin B (Gibco), insulin-transferrin-selenium (Gibco), 0.025 μg/ml recombinant human EGF (Sigma Aldrich, St Louis, USA), 0.1 μg/ml Cholera toxin (Sigma Aldrich, St Louis, USA), 30 μg/ml bovine pituitary extract (Sigma Aldrich, St Louis, USA), and 0.01 μM freshly added all-trans retinoic acid (Sigma Aldrich, St Louis, USA). 10 μM Y-27632 (Tocris) was added for the first 48 h of culture. Microscopy for organoid quantification at day 14 was performed using a LSM710 system (Zeiss) containing an inverted AxioObserver.Z1 stand.
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2

Immunofluorescence Analysis of Tumor Samples

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Immunofluorescence analysis of cells were performed as described previously [74 (link)] and analyzed using a Zeiss LSM710 confocal microscope with a Zeiss AxioObserver Z1 stand. Formalin-fixed paraffin-embedded (FFPE) tumors were sectioned with a thickness of 5 µm and stained for respective antigens as described previously [58 (link)]. Antigen retrieval was performed in citrate buffer with a pressure cooker. Breast cancer tissue microarray slides (TMA BC01) were purchased from Reveal Biosciences.
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3

Imaging Podosomes and Mitochondria

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Podosomes were visualized by phalloidin staining (Sigma-Aldrich) following manufacturer’s instructions. After removing unbound phalloidin conjugates, cells were labeled with 1 μg/ml DAPI (Sigma-Aldrich). Microscopic imaging was performed using a fluorescence microscope (Zeiss Axio Observer D1). For mitochondrial analysis, live cells were labeled with 200 nM MitoTracker Orange (ThermoFisher) according to manufacturer’s recommendations. After staining, cells were fixed in 4% formaldehyde, labeled with 1 μg/ml DAPI and subjected to z-stack confocal microscopy analyses (Zeiss LSM 710 on an inverted Axio Observer.Z1 stand). Images were processed using Fiji/Image J software (Schindelin et al., 2012 (link)).
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4

Immunofluorescence Assay for LC3 Puncta

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Cells were fixed in 4 % paraformaldehyde for 15 min, washed three times with PBS, and then permeabilized with 0.3 % Triton X-100 in PBS for 15 min. After blocking with 2 % BSA and 0.3 % Triton X-100 in PBS for 30 min, cells were incubated with primary antibody LC3B at a dilution of 1:200 in 2 % BSA overnight at 4 °C. After washing with PBS for 15 min, the cells were incubated with Goat Anti-Rabbit FITC secondary antibody (1:200) for 1 h at room temperature, and mounted with Permount SP15-100 toluene solution. LC3 II puncta images were acquired with a fixed thickness section on a Zeiss LSM710 confocal microscope with a Zeiss AxioObserver Z1 stand. The numbers of puncta per cell were counted manually.
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5

Live-cell Confocal Microscopy Imaging

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Confocal time-lapse microscopy was implemented on an LSM 710 system (Carl Zeiss) containing an inverted AxioObserver.Z1 stand equipped with phase-contrast and epi-illumination optics and operated by ZEN2009 software (Carl Zeiss). The following objectives were used for imaging: EC Plan-Neofluar 20×/0.8 NA (numerical aperture) (Carl Zeiss), LD C-Apochromat 40×/1.1 NA water objective lens (Carl Zeiss), and LCI PLN-NEOF DICIII 63×/1.30 NA water objective lens (Carl Zeiss). For 4D imaging, the cells were kept in an incubation chamber (Carl Zeiss) under standard cultivation conditions (37°C and 5% CO2). Thickness of single confocal layers within the z-stacks was set according to optimized values suggested by the ZEN2009 software. The confocal datasets were either maximum intensity projected in the ZEN2009 software (Carl Zeiss) and/or imported into Imaris 9.0.0-9.3.1 software (Bitplane) for analysis.
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6

Laser Microirradiation and Fluorescence Analysis

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Laser microirradiation was carried out on an inverted two-photon microscope (LSM780; Carl Zeiss) equipped with an inverted Axio Observer.Z1 stand, motorized scanning stage, and integrated laser microbeam system, with total UV laser output set to 750 nm (8%). Cells cultured on glass-bottomed confocal dishes (SPL Life Sciences) were subjected to laser microirradiation in a temperature-controlled (37 °C) environmental chamber supplied with 5% CO2 at 24 h after transient transfection with GFP-tagged indicated plasmids. Time-lapse images were acquired by ZEN 2012 (Carl Zeiss) software with a Plan Apochromat 40×/1.4 oil differential interference contrast (DIC) M27 objective and further processed by ImageJ software to analyze mean fluorescence intensity (MFI) across the laser-microirradiated regions. MFI was quantified as the difference between the average fluorescence intensity in the laser-microirradiated regions versus the average fluorescence intensity from adjacent undamaged regions of the same size in the same nucleus.
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7

Immunofluorescence Staining of Acss2 in MEFs

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Acss2 ED and WT littermate MEF were plated onto chamber slides, incubated for 24 hr, fixed with ice cold methanol for 15 min at -20°C, then rinsed with 1x PBS. Cells were permeabilized with 0.5% Triton X-100 in 1x PBS for 10 min at room temperature, then rinsed once with 1x PBS. Slides were blocked for 30 min at room temperature in 5% normal goat serum, 1% fish skin gelatin (Cat. # G7765, Sigma, St. Louis, MO), 1% BSA (Cat. # A3059, Sigma, St. Louis, MO) in 1x PBS, then incubated in anti-Acss2 antibody (Cat. # 3658, Cell Signaling Technology, Danvers, MA) diluted 1:400 in blocking solution for 2 hr at room temperature. Slides were washed 3 times in 1x PBS, once in 1x PBS + 0.1% Triton X-100 for 1 min each wash, followed by a 1 hr room temperature incubation with Alexa 555 goat anti-rabbit secondary antibody (1:400 dilution; Cat. # 4413, Cell Signaling Technology, Danvers, MA). Slides were washed 3 times for 1 min in 1x PBS, then mounted with Vectashield containing DAPI (Cat. # H1200NB, Vector Labs, Burlingame, CA). Fluorescent images were obtained with 20X magnification using a Zeiss LSM 880 on an AxioObserver Z1 stand with Zen 2.3 Pro software (University of Texas Southwestern O’Brien Kidney Center Core).
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8

Live-cell Imaging of SNAP-β2AR Signaling

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SNAP‐β2AR cells were seeded onto poly‐D‐lysine‐coated (10 µg/ml) 8‐well Nunc™ Lab‐Tek™ chambered coverglass (No. 1.0 borosilicate glass bottom) in DMEM supplemented with 10% FBS at a density of 10–15,000 cells per well 2 days prior to experiment. On the day of the experiment, media were replaced with labeling media which contained SNAP‐Surface® Alexa Fluor® 488 or 647 (New England Biolabs) at a final concentration of 0.5 μM (for 30 min at 37ºC). Cells were then washed in warm HBSS before a final addition of 200 μl of HBSS per well.
Cells were imaged on a Zeiss LSM880 with a Zeiss Axio Observer Z1 stand (Carl Zeiss) with a 40× C‐apochromat NA1.2 water immersion objective. Excitation was via 488 nm Argon and 633 nm helium‐neon laser lines with a 488/561/633 multibeam splitter and emission collected using a 493–628 bandpass or 638–737 bandpass. The pinhole was set at 1 Airy unit for the longer wavelength and laser power and gain and offset settings kept constant within experiment to allow comparison. Cells were imaged live at 24ºC following a 30 min pre‐incubation at 37ºC in the presence of fluorescent ligand (100 nM) following a 30 min pre‐incubation at 37ºC in the presence or absence of 10 μM propranolol. Equatorial plane images were made and four images captured per condition per experiment using ZEN 2012 software (Carl Zeiss).
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9

SNAP Labeling of Adherent Cells

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Cells were plated at varying densities on 8-well Nunc Labtek chambered coverglasses in growth media and left overnight. Slides were pre-coated with poly-D-lysine (HEK293T) or Matrigel (ES progenitor cells and cardiomyocytes) or used without pre-coating in the case of fibroblasts. The following day the media was removed and cells were SNAP labeled with SNAP-Surface Alexa Fluor 488 (SNAP-488) as described above. Cells were imaged on either the Zeiss LSM710 or Zeiss LSM880 confocal microscopes, both with a Zeiss Axio Observer Z1 stand (Carl Zeiss, Germany) using 488 nm Argon laser excitation (to image SNAP-488), a 493-630 nm emission range, and a plan-apochromat 40× 1.2NA oil immersion objective. Pinhole was set at 1 airy unit and gain and offset settings were kept constant within the experimental day. Cells were imaged in the presence or absence of formoterol and processed using Zen Black (2012) software (Carl Zeiss, Germany).
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