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2 protocols using hemo klentaq reaction buffer

1

miRNA Amplification and Library Cleanup

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Probe-captured miR samples were then amplified and indexed via polymerase chain reaction (PCR) using master mix (10 mM deoxyribonucleotide triphosphate (dNTP) 5× Hemo Klentaq® Reaction buffer, Hemo Klentaq® DNA polymerase (New England Biolabs Inc., Ipswich, MA, USA), forward, and reverse primers (HTG Molecular Diagnostics Inc., Tucson, AZ, USA)). The PCR conditions for the reactions were: (1) 95 °C for 4 min, (2) 95 °C for 15 s, (3) 56 °C for 45 s, (4) 68 °C for 45 s, (5) repeat steps 2–4 for 16 total cycles, (6) 68 °C for 10 min, and (7) hold at 4 °C. Following PCR, library cleanup was performed using Ampure® XP beads (Beckman Coulter Inc., Brea, CA, USA). The samples were mixed and incubated with the beads at room temperature (RT) for 5 min. The bead-bound libraries were then washed twice with 80% ethanol to remove any leftover PCR reagents and enzymes. After washing, the samples were dried at RT for 2 min to allow the residual ethanol to evaporate. The libraries were then eluted off the beads with 10 mM Tris hydrochloride (Tris-HCl), pH 8.0.
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2

Antimicrobial Susceptibility Testing Protocol

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Hemo KlenTaq polymerase and Hemo KlenTaq Reaction Buffer were purchased from New England Biolabs (Ipswich, MA USA). Primers were synthesized by Integrated DNA Technologies, Inc. (Coralville, IA, USA). Deoxynucleotide (dNTP) Solution Mix was purchased from Thermo Fisher Scientific (Waltham, MA, USA). EvaGreen Dye was purchased from Biotium Inc. (Fremont, CA, USA). All components for GW medium (medium 199, dextrose, ammonium bicarbonate, sodium acetate trihydrate, L-glutamine, spermidine, L-arginine, hypoxanthine, uracil, oxaloacetate, thiamine hydrochloride, L-ornithine, nicotinamide adenine dinucleotide, and sodium D,L-lactate) were purchased from MilliporeSigma (St. Louis, MO, USA). All components were weighed or measured by volume, reconstituted in working concentration, and adjusted to pH 6.8 at room temperature as described by Wade and Graver.18 (link) All antimicrobials used in this study (penicillin, tetracycline, and ciprofloxacin) were purchased from MilliporeSigma. All E-test strips were purchased from BioMérieux (Marcy-I’Étoile, France).
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