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Pgbkt7 bait vector

Manufactured by Takara Bio
Sourced in United States

The PGBKT7 bait vector is a plasmid used in yeast two-hybrid systems for the detection of protein-protein interactions. It contains a DNA-binding domain that can be fused to a target protein to create a 'bait' construct. The bait vector allows for the expression and screening of the bait protein in yeast cells.

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8 protocols using pgbkt7 bait vector

1

Yeast Two-Hybrid Screening of AnkH Interactors

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A Matchmaker gold two-hybrid system (Clontech) was used to screen host proteins that interact with the AnkH protein per the instructions of the manufacturer. Full-length AnkH coding sequence was amplified, subjected to sequencing, cloned into the pGBKT7 bait vector (Clontech), and transformed into yeast strain AH109 (Clontech). A normalized universal human cDNA library in pGADT7 was purchased (Clontech) for use as potential prey targets. The library and bait containing AH109 were mated, and the resulting colonies were screened per the instructions of the manufacturer. Plasmids from positive clones were isolated using yeast lysis buffer and glass beads. Isolated prey plasmid and bait plasmid were used to cotransform the AH109 yeast strain. Transformants were selected by growing the yeast on SD medium lacking His, Leu, and Trp (SD-His/-Leu/-Trp) (Clontech). Colonies that tested positive were then transferred to SD-Ade/-His/-Leu/-Trp plates containing 5-bromo-4-chloro-3-indoxyl-α-d-galactopyranoside (X-α-Gal) (GoldBio). Blue colonies were selected for plasmid isolation. Isolated plasmids were then sequenced to identify the human genes.
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2

Yeast Two-Hybrid Screening of AgMDL1

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AgMDL1 was amplified from Sua5B cDNA and cloned into the pGBKT7 bait vector using the primers described in S1 Table according to the Matchmaker Gold Yeast Two Hybrid System user protocol (Clontech). For cDNA library construction, total RNA was isolated from Sua5B cells, reverse-transcribed into cDNA, and cloned into the pGADT7 prey vector using the Make Your Own Mate and Plate Library System (Clontech). pGBKT7 (bait) and pGADT7 (prey) vectors were transformed in the Y2HGold and Y187 yeast strains, respectively. Screening was performed according to the Matchmaker Gold Yeast Two-Hybrid System user protocol (Clontech) using either double dropout synthetic medium (leucine and tryptophan) or quadruple dropout synthetic medium (leucine, tryptophan, adenine, histidine) supplemented with aureobasidin and X-α-Gal (Clontech). Positive clones were sequenced and blasted against the An. gambiae genome in Vectorbase. Interacting proteins were confirmed using standard pulldown assays.
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3

Yeast Two-Hybrid for Protein Interactions

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Yeast Two-hybrid experiment was performed as described previously (Yang et al., 2015 (link)). Briefly, cDNA encoding interesting genes were amplified from w1118 ovary cDNA and cloned into either pGBKT7 bait vector or pGAD prey vector (Clontech). The pGBKT7 and pGAD plasmid carrying interesting genes were co-transformed into AH109 yeast cells according to a standard procedure. Colonies appearing on media lacking tryptophan and leucine (SC-WL) were picked onto selection plate lacking tryptophan, leucine and histidine (SC-WLH) or tryptophan, leucine, histidine and adenine (SC-WLHA) to determine proteins interaction.
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4

Yeast two-hybrid screen for Atg5 interactors

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Yeast two-hybrid screens were described elsewhere [35 (link)]. Briefly, a full-length human Atg5 cDNA in the pGBKT7 bait vector (CLONTECH) was screened against a thymus cDNA library (CLONTECH) in the AH109 yeast strain. Colonies that are formed under selection conditions (lack histidine, adenine, tryptophan and leucin) were analysed by sequencing. Clone 47 corresponded to a sequence coding for PSMA7 amino acids 174-248.
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5

Cloning and Construction of GmSNAP18 and GmSHMT08 Fusions

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The coding sequences of the GmSNAP18 gene with only one (GmSNAP18Δ73−184), two (GmSNAP18Δ109−184), three (GmSNAP18Δ152–184), or four (full length) TPR domains were amplified from Forrest cDNA using forward and reverse primers containing NdeI and SalI restriction enzyme sites, respectively. The PCR product was digested and fused to the GAL4 DNA binding domain of the pGBKT7 bait vector (Clontech, Mountain View, CA 94043, USA). Similarly, the coding sequence of the GmSHMT08 gene was PCR-amplified using forward and reverse primers containing EcoRI and XhoI restriction enzyme sites, respectively (Table S1). The PCR product was digested, purified and ligated to the GAL4 DNA activation domain of the pGADT7 prey vector (Clontech). All constructs were verified by sequencing.
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6

Yeast Two-Hybrid Screening of Mouse Embryonic Library

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Sense- and antisense oligonucleotides (AATTCTGCGGACTGAGCGGGTTAGGC GTTGCTG, GATCCAGCAACGCCTAACCCGCTCAGTCCGCAG) encoding the CooP sequence were cloned into a pGBKT7 bait vector (Clontech Laboratories). Mouse embryonic (E12.5) library in the Pad-GAL4-2.1 prey vector was transformed into yeast cells expressing the baits. Clones producing β-galactosidase were isolated, and the prey cDNAs were sequenced. Screen was performed according to the Fields method (17 (link)) at the Yeast Two-Hybrid Core Facility (University of Helsinki, Finland).
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7

Yeast Two-Hybrid Screening of PmDAMs

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Full-length coding sequences of PmDAMs were amplified via the PCR method with specific primers (Supplementary Table 5). To clone these sequences into pGBKT7(bait) vectors and pGADT7 (prey) vectors (Clonetech, United States) at the EcoRI and BamHI sites respectively, In-Fusion HD Cloning System (Clonetech, United States) was used. Yeast 2 hybrid assay was performed according to the previous method (Zhou et al., 2017 (link)). The screenings for each interaction were applied in triplicate.
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8

Yeast Two-Hybrid Screening of PmDAMs and PmSVPs

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The cDNA of PmDAMs and PmSVPs was amplified by PCR with gene-specific primers (Supplementary Table S3). These sequences were cloned into the pGBKT7 (bait) vectors and pGADT7 (prey) vectors (Clonetech, United States) at the EcoRI and BamHI sites, respectively, using InFusion HD Cloning Kit System. All baits were tested for autoactivation and toxicity. The yeast two-hybrid assays were performed according to the previous method (Zhao et al., 2018a (link)). The screening for protein–protein interaction was applied in triplicate.
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