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9 protocols using ab212184

1

Immunoprecipitation and Immunoblotting of α-Synuclein

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Flash frozen cortex was homogenised in 1% Triton‐X100 with Complete protease inhibitors. Protein concentration was quantified using a BCA assay. Homogenate containing 1 mg protein was ultracentrifuged at 120,000 g (Beckman Optima Max‐XP) for 1 h at 4°C. The pellet was dispersed in 1% Triton‐X100 using a needle to produce a homogenate containing a Triton‐insoluble fraction. From this homogenate, a 5% input was removed for subsequent immunoblotting. The remaining triton‐insoluble fraction was incubated overnight at 4°C with the IP antibody against α‐synuclein (1:100, Abcam ab212184). The mixture was then incubated with 25 μl Protein G Dynabeads according to the manufacturer's instruction. The protein of interest was eluted using NuPAGE LDS sample buffer and separated by electrophoresis on a 4%–12% polyacrylamide gel. Immunoblotting was performed using 5% milk blocking with overnight incubation at 4°C with an α‐synuclein antibody (1:1000, BD 610787). The membrane was incubated with a horseradish‐peroxidase‐conjugated anti‐mouse antibody (1:20,000, Sigma A9917) for 1 h, and visualised with chemiluminescence.
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2

Triton-Insoluble α-Synuclein Immunoprecipitation

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Flash frozen cortex was homogenised in 1% Triton-X100 with Complete protease inhibitors. Protein concentration was quantified using a BCA assay. Homogenate containing 1 mg protein was ultracentrifuged at 120,000 g (Beckman Optima Max-XP) for 1 h at 4°C. The pellet was dispersed in 1% Triton-X100 using a needle to produce a homogenate containing a Triton-insoluble fraction. From this homogenate, a 5% input was removed for subsequent immunoblotting. The remaining tritoninsoluble fraction was incubated overnight at 4°C with the IP antibody against α-synuclein (1:100, Abcam ab212184). The mixture was then incubated with 25 μl Protein G Dynabeads according to the manufacturer’s instruction. The protein of interest was eluted using NuPAGE LDS sample buffer and separated by electrophoresis on a 4%–12% polyacrylamide gel. Immunoblotting was performed using 5% milk blocking with overnight incubation at 4°C with an α-synuclein antibody (1:1000, BD 610787). The membrane was incubated with a horseradish-peroxidase-conjugated anti-mouse antibody (1:20,000, Sigma A9917) for 1 h, and visualised with chemiluminescence.
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3

Quantitative Analysis of Neurodegeneration Markers

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SH-SY5Y cells and the substantia nigra from mice brains treated with or without reserpine were analyzed. Western blotting was conducted as reported previously. RIPA lysates containing protease and phosphatase inhibitors were used to obtain the protein samples (Li Y. et al., 2019b (link)). Protein concentrations were determined using the BCA quantification method (Pierce, Rockford, IL). The same quantity of protein samples (30 μg) was added per well in the 10% and 15% sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Following electrophoresis proteins were transferred to the 0.45 μm PVDF membranes. The blots were blocked in 5% milk for 1 h. Blots were incubated overnight at 4°C with primary antibodies against alpha-synuclein (Abcam, ab212184), LC3 (Abcam, ab51520), p62 (CST, 8025), DNMT3b (Abcam, ab119282) and GAPDH (Mesgen biotechnology, MAN1002). On the next day, the blots were incubated with the secondary antibody, (goat anti-rabbit IgG (H + L) HRP (Mesgen, MAN4001), or goat anti-mouse IgG (H + L) HRP (Mesgen, MAN4002)) for 1 h at room temperature. The ECL detection solution was prepared as follows: A: B = 1:1, mixed homogeneously. Blots were imaged for detecting luminescence. Finally, the grayscale values were analyzed using Fiji Image J software.
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4

Immunohistochemical Analysis of Tyrosine Hydroxylase and α-Synuclein in Brain Tissue

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To prepare brain tissue sections, they were first deparaffinized in xylene and rehydrated through graded ethanol. Antigen retrieval was performed, followed by blocking to prevent non-specific binding. The sections were then incubated with primary antibodies (Tyrosine Hydroxylase (TH), ab137869, Abcam; α-syn, ab212184, Abcam) and secondary antibodies (IgG H&L (HRP), ab97080, Abcam), with PBS rinses in between. DAB substrate was applied for color development, monitored microscopically, and stopped with distilled water. Hematoxylin was used for counterstaining, followed by dehydration, clearing in xylene, and mounting. The stained sections were then ready for microscopic examination and image capture (Ts2-FC, Nikon, Japan).
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5

Immunohistochemical Analysis of Midbrain Dopaminergic Neurons

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The brains of the treated mice were collected and fixed with 4% paraformaldehyde for 72 h. Then, the SNpc tissues were embedded, and paraffin sections of 10 μm thickness were obtained. The block process was performed after antigen retrieval, in which the slides were incubated in 10% rabbit serum for 30 min at room temperature. Then, primary antibodies for TH (GB12181, Servicebio, China) and α-syn (ab212184, Abcam, China) were applied, and then the slices were washed and incubated with secondary antibodies. After counterstaining with DAPI for 10 min and sealing, the slides were observed using a panoramic section scanner.
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6

Western Blot Analysis of Protein Targets

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Total protein extracts were separated by 10% SDS–PAGE (Beyotime) and transferred onto polyvinylidene difluoride (PVDF) membranes, which were blocked with 5% nonfat milk for 2 h and then incubated with antibodies against alpha‐synuclein (1:500, No. ab212184, Abcam), TH (1:500, No. ab112, Abcam), Gapdh (1:1000, 14C10, CST), CCR5 (1:200, sc‐17,833, Santa Cruz Biotechnology), and CCL5 (1:100, sc‐365,826, Santa Cruz Biotechnology) antibodies at 4°C overnight. Then, the membranes were washed with TBST and incubated with goat anti‐rabbit IgG H&L (HRP‐conjugated) (1:10000, ab6721, Abcam) or rabbit anti‐mouse IgG H&L (HRP‐conjugated) (1:10000, ab6728, Abcam) for 1 h at room temperature. The signal was detected with Immobilon Western Chemiluminescent HRP Substrate (Millipore), and the gray values of the bands were analyzed with ImageJ software.
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7

Immunohistochemical Analysis of Substantia Nigra

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The SNpc tissue (freezing microtome, 20 µm) were detected with anti-TH antibody (Abcam, ab137869) and anti-α-syn antibody (Abcam, ab212184) at a dilution of 1:200. Coronal sections (20 μm) of SNpc tissues were washed with PBS 3 times for 15 min and then were immersed into citrate antigen retrieval solution for 40 min (95°C water bath). Incubated tissue sections for 1.5 h in a blocking solution (0.3% TritonX-100, 10% goat serum in 0.01 M PBS) and then immunostained with a mixture of primary antibodies in a blocking solution at 4 °C on a shaker overnight. After washing in PBS 3 times, sections were incubated with corresponding fluorescent secondary antibodies (1:1000) for 1.5 h at room temperature in the dark and then washed with PBS 3 times. Sealed sections by antifading mounting medium with DAPI, observed and obtained images by fluorescence microscopy (JEOL1200CX).
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8

Carbonylated α-Synuclein Identification

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Cleared RBC lysates corresponding to 1 mL of blood were placed in plastic 3 mL Petri dish plates and irradiated with total UV doses of 0.75 J/cm2 and 1.5 J/cm2, respectively. The samples were then transferred to a 2 mL microcentrifuge tube and incubated overnight at 4 °C with rotation with 3 μg of anti-α-Syn monoclonal antibody (Abcam, AB212184). The antibody-protein complex was captured by adding 50 μL of protein A to magnetic beads (SureBeads™, BioRad) for 3 h with rotation at 4 °C. The beads were washed three times with phosphate-buffered saline containing 0.05% Tween (PBS-T), and the carbonylated α-Syn was derivatized and blotted as described below.
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9

Western Blot Analysis of Dopaminergic Markers

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Mice were anesthetized and euthanized by cervical dislocation. Striata were processed as previously described [37 (link)] [40 (link)] Samples were tested for the following primary antibodies: rabbit anti-DAT (D6944, 1:1000; Sigma Aldrich, Saint Louis, Missouri, USA), rabbit anti-VMAT2 (V9014, 1:300; Sigma Aldrich, Saint Louis, MO, USA), rabbit anti-pSer129 α-syn (ab51253, 1:2000; Abcam, Cambridge, UK), rabbit anti-α-syn (ab212184, 1:1000; Abcam, Cambridge, UK), and anti-rabbit GAPDH (PA1-988, 1:1000; Thermo Scientific, Carlsbad, CA, USA). After incubation with secondary antibody (goat anti-rabbit IgG HRP-conjugate 12–348, 1:4000; Merck Millipore, Darmstadt, Germany), immunoreactive proteins were visualized by enhanced chemiluminescence (ECL) detection kit (PierceTM BCA Protein Assay Kit, Thermo Scientific or ECL+, GE Healthcare) and images acquired and quantified using the ChemiDoc MP System and the ImageLab Software (Bio-Rad, Hercules, CA, USA). Data were analyzed by densitometry, and the optical density of specific target protein bands was normalized to the housekeeper protein level.
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