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21 protocols using anti hsp60

1

Lung Cancer Cell Line A549 Culture

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Human non-small cell lung cancer cell line A549 (CCL-185) was obtained from Chinese Academy of Sciences Cell Bank of Type Culture Collection (CBTCCCAS) and cultivated in Dulbecco's Modified Eagle Medium (DMEM) supplemented with 5% fetal bovine serum, 2 mM L-glutamine, 100 U/L penicillin and 0.1 mg/ml streptomycin (all from Life technology, Grand Island, NY) and maintained in a humidified incubator with 5% CO2 at 37°C.
Antibodies used in this study were: anti-LC3 (Thermo Scientific, Waltham, MA, PAI-16930, 1:500 dilution), anti-p62/SQSTM1 (Epitomics, Burlingame, CA, #3340-1, 1:3000 dilution), anti-HSP60 (Epitomics, #1724-1, 1:10000 dilution), anti-caspase-3 (Cell Signaling Technology, #9662, 1:1000 dilution), anti-caspase-9 (Cell Signaling Technology, #9502, 1:1000 dilution), anti-cytochrome c (Epitomics, #2119-1, 1:1000 dilution), anti-HSP60 (Epitomics, #1724-1, 1:3000 dilution), anti-GAPDH (Bioworld, Minneapolis, MN, MB001, 1:5000 dilution) and HRP-conjugated secondary antibodies (Multisciences, Hangzhou, China, GAR007 and GAM007, 1:5000 dilution).
The following reagents, 3-Methyladenine (3-MA, #M9281), chloroquine (CQ, #C6628), z-VAD-fmk (#V116) and trypan blue (#T6146) were all obtained from Sigma-Aldrich (Saint Louis, MO).
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2

Western Blot Antibodies for OXPHOS

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Antibodies used for Western blot included the Total OXPHOS Human WB Antibody Cocktail (#ab1104a1; Abcam), anti-Aco2 (#ab110321; Abcam), anti-4E-BP1 (#9644; Cell Signaling) and anti-phospho-4E-BP1 (#2855; Cell Signaling), anti-EF-1α1/2 (#sc-377439; Santa Cruz), anti-Hsp60 (#ab59457; Abcam), anti-Hsp70 (#ab47455; Abcam), anti-Hsp90 (#16F1; Enzo), anti-Mdh2 (#sc-293474; Santa Cruz), anti-Mia40 (#sc-365137; Santa Cruz), anti-rpS6 (#ab40820, Abcam); anti-phospho-rpS6 (#ab65748; Abcam), anti-SMAC (#ab8114; Abcam), anti-Tim22 (#14927-1-AP; Proteintech), anti-ubiquitin (#701339; Thermo Scientific), and anti-VDAC (#sc-390996; Santa Cruz). Total proteins were stained with REVERT Total Protein Stain (#926-11011; LI-COR).
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3

Investigating Nur77-mediated Inflammation

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Anti-Myc (9E10) (Cat. Sc-40), and anti-Hsp60 (Cat. ab46798) antibodies from Abcam (UK); anti-Ubiquitin (Cat. 3933S), anti-β-actin (Cat. 4970S), anti-IκBα (Cat.4814S), and anti-LC3 (Cat. 4108S) antibodies from Cell Signal Technology (Beverly, MA, USA); anti-Nur77 (M-210) (Cat. sc-5569), anti-LC3B (Santa Cruz sc-28266), anti-p65 (Santa Cruz sc-109) and anti-GST (Cat.sc-138) antibodies from Santa Cruz Biotechnology (Santa Cruz, CA, USA); mouse IL-1β (interleukin 1β, Cat. E-EL-M0037c) and IL-6 (interleukin 6, Cat. E-EL-M0044c) ELISA kits for IL-1β and IL6 from Elabscience Biotechnology (Wuhan, Hubei, China); LPS (Lipopolysaccharide, Cat. L2630) and D-Gal N (D-Galactosamine, Cat. G0500) from Sigma (St. Louis, MO, USA); TianScript RT kit (Cat. KR104-02) from TianGen Biotechnology (Beijing, China); and Nur77, RXRα, and control siRNAs from Sigma were used.
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4

Quantifying Mitochondrial Protein Glutathionylation

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To measure mitochondrial protein glutathionylation, mitochondrial lysates were separated by SDS-PAGE. Blots were probed for glutathionylation using a 1:1,000 dilution of the anti-GSH antibody (Virogen, Watertown, MA) followed by a 1:1,000 dilution of horseradish peroxidase-linked goat anti-mouse Ig secondary antibody (Cell Signaling). Blots were also probed with a 1:5,000 dilution of anti-Hsp60 (AbCam, Cambridge, MA) to control for equal loading. To visualize multiple bands on the same blot, blots were stripped with Restore Western Blot Stripping Buffer (Pierce) before being probed with a new antibody. Proteins were normalized to Hsp60 to correct for loading differences. To determine the overall level of protein glutathionylation, bands were quantified using a ScanJet 4C scanner (Hewlett Packard, Palo Alto, CA) and Image J analysis software (National Institutes of Health, Bethesda, MA). To measure Complex III protein glutathionylation, mitochondrial cell lysates were immunoprecipitated for Complex III using a Complex III Immunocapture kit (AbCam), separated by SDS PAGE and immunobloted with the anti-GSH antibody, as previously described [11 (link)].
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5

Immunohistochemical Evaluation of Cellular Markers

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Immunohistochemical staining was performed as previously described.23 The anti‐Ki‐67 (Cat.ab16667, 1:200) and the anti‐HSP60 (Cat.ab46798, 1:200) were purchased from Abcam, and the anti‐COX IV was purchased from Cell Signaling Technology (Cat.4850 S, 1:1000). The expression level of target proteins was independently evaluated by two pathologists blinded to the clinical data according to the intensity (0, none; 1, faint yellow; 2, yellow; 3, brown) and proportion of positive cells (0, 0%–9%; 1, 10%–25%; 2, 26%–50%; 3, 51%–75%; 4, 76%–100%), which were determined within five microscopic visual fields per slide (magnification 200×). IHC staining results were then scored (ranging from 0 to 12) by multiplying the percentage of positive cells by the intensity.
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6

Multiparametric Evaluation of Mitochondrial Function

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Anti-Myc (9E10) (Cat. Sc-40), anti-Ki67 (Cat. ab15580) and anti-Hsp60 (Cat. ab46798) antibodies were purchased from Abcam (UK); anti-β-actin (Cat. 4970S), anti-Cleaved caspase-3 (Cat. 9661S), and anti-Nur77 (Cat. 3960S) antibodies were purchased from Cell Signal Technology (Beverly, MA, USA); anti-Nur77 (M-210) (Cat. sc-5569), anti-PCNA (Santa Cruz sc-7907), anti-a-tublin (Santa Cruz sc-8035), anti-Bcl-2 (Santa Cruz sc-783), anti-PARP (Santa Cruz sc-7150), and anti-GST (sc-138) antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA); anti-Flag (Cat.F1804) antibody was purchased from Sigma (St. Louis, MO, USA); Mito-tracker deep red (Cat. M22426), JC-1 Probe (Cat. T3168) and mitoSOX Red Mitochondrial Superoxide Indicator (Cat. M36008) were purchased from Thermo Fisher.
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7

Protein Expression Analysis by Western Blot

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Cells were subjected to Western blot analysis as described previously [17 (link)]. Antibodies used were as follows: anti-PPARγ2 (PA1-824) from Thermo Fisher Scientific, anti-PPARγ (H-100) (sc-7196), anti-PPARγ (E-8) (sc-7273), anti-Tom20, anti-Lamin B1 from Santa Cruz, anti-UCP1[20 (link)], and anti-HSP60 from Abcam.
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8

Immunofluorescence Imaging of OMM-PAC Cells

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PAC MVD7 stable cells were plated on glass bottom plates (Mattek) and grown overnight. The following day, cells were fixed in 4% paraformaldehyde in PBS for 10 min at room temperature. Cells were briefly rinsed with PBS and blocked/permeabilized in 5% Donkey serum + 0.1% Triton X 100 + PBS for 1 h at room temperature. Blocking buffer was replaced with primary antibodies (mouse anti-Hsp60 1:100, rabbit anti-mCherry 1:500, abcam) diluted in primary antibody buffer containing 1% BSA + 0.1% Triton X 100 in PBS and cells were incubated in primary antibody overnight at 4 °C. The following day primary antibody was aspirated, and cells were washed 3 × 5 min in PBS. Secondary antibodies (anti-mouse Alexa Fluor 488 and anti-rabbit Alexa Fluor 568, ThermoFisher) were applied in blocking buffer at a dilution of 1:1000 and incubated at room temperature for 1 h. Cells were washed once with PBS for 5 min before staining with Alexafluor 647-conjugated phalloidin (1:100) in 1% BSA in PBS for 15 min. Cells were washed and stained with Hoechst 33342 (5 μg/mL). Cells were imaged on an inverted Olympus FV1000 confocal microscope using a 60X oil immersion objective.
Colocalization analysis of OMM-PAC cells. Images of OMM-PAC cells prepared as described above were analyzed using imageJ’s Coloc2 plugin with Costes thresholding.
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9

Immunoblotting Analysis of Mitochondrial Proteins

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Twenty to thirty micrograms of total or mitochondrial protein was separated on SDS-polyacrylamide gel and electro-blotted onto a nitrocellulose membrane (Bio-Rad). Membranes were saturated with blocking buffer for 1 h at room temperature and incubated overnight at 4°C with monoclonal mouse anti-VDAC (1:1000, Abcam), anti-OXPHOS (1:5000, Abcam), anti-IP3R1 (1:1000, Santa Cruz), anti-NDUFA13 (1:1000, Abcam), anti-GAPDH (1:10 000, Abcam) or with polyclonal rabbit anti-MCU (1:500, Abcam), anti-MICU1 (1:500, Thermo Fisher), anti-MICU2 (1:500, Sigma Aldrich), anti-PDH-E1α (1:1000, Abcam), anti-PDHE1α phosphor Ser 293 (1:1000, Abcam), anti-PDHE1α phosphor Ser 300 (1:1000, Millipore), anti-PDHE1α phosphor Ser 232 (1:1000, Calbiochem), anti-PDK4 (1:1000 Novus Biotech), anti-GRP75 (1:1000, Santa Cruz), anti-SIGMA1R (1:1000, Cell Signaling), anti-MFN2 (1:1000, Abcam), and anti-Hsp60 (1:1000, Abcam). Hsp60 and GAPDH were used as loading controls. All immunoblots were developed and quantified using the Odyssey infrared imaging system (LICOR Biosystems) and infrared-labeled secondary antibodies. Band intensities were quantified with ImageJ.
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10

Immunofluorescence Staining of Microglia

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Immunofluorescence was performed as described previously [24 (link)]. Primary mouse microglial cells as well as N9 murine microglial cells were stained with anti-HSP60 (Abcam) and Iba-1 (Millipore) antibodies. Fluorescein isothiocyanate (FITC)-conjugated secondary antibody was used with mounting medium containing 4,6-diamidino-2-phenylindole (Vector Laboratories, Burlingame, CA, USA). The fluorescence images were captured using Zeiss apotome microscope (Carl Zeiss MicroImaging GmbH, Göttingen Germany; Scale bar—20 μm) at ×40 magnification under corresponding excitation and emission wavelengths.
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