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4 protocols using ab4816

1

Protein Expression Analysis in Tumor Samples

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Proteins extracted from tumor tissue and cells were separated by Sodium Dodecyl Sulphate-Polyacrylamide Gel Electrophoresis (SDS-PAGE) and transferred to Polyvinylidene Fluoride (PVDF) membranes (Sigma Aldrich). Following blockade with bovine serum albumin (Sigma Aldrich) and incubation with primary antibodies against DSG3 (1:2000, ab218380, Abcam), Src (ab47405) and p-Src (1:2500, p-Tyr418, ab4816 Abcam), FAK (ab131435) and p-FAK (1:3000, p-Tyr397, ab81298, Abcam), AKT (ab235958) and p-AKT (1:3500, p-Ser 473, ab81283, Abcam), and β-actin (1:4000, ab8227, Abcam), the membrane was then incubated with HRP-conjugated secondary antibody (1:5000, ab205718, Abcam), and the signals were detected with chemiluminescence system (Tanon, Shanghai, China).
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2

Fyn and Src Kinase Activity in Rat Striatum

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Rat dorsal striatum tissue was homogenized using BioRuptor in 1× IP buffer (150 mM NaCl, 10 mM Tris-HCl pH = 7.4, 1 mM EDTA, 1 mM EGTA, 1% Triton X-100) containing protease and phosphatase inhibitors. Homogenates were pre-cleared using protein G Dynabeads for 1 h at 4 °C. For immunoprecipitation, 1 mg of pre-cleared protein was incubated overnight at 4 °C with 7.5 µg of total Fyn (4023S, Cell Signaling, diluted 1:1000) or 5 µg of total Src (ab16885, Abcam, diluted 1:1000) antibody. Immunocomplexes were pulled down with protein G Dynabeads for 4 h at 4 °C and eluted into Laemmli buffer at 55 °C for 10 min. 50 µg of immunoprecipitated protein was used for western blotting. To determine kinase activity, antibodies against active p(Y418)-Src (ab4816, Abcam, diluted 1:200) and inactive p(Y529)-Src (ab32078, Abcam, diluted 1:1000) were used. In addition, dorsal striatal protein tyrosine kinase activity was also measured using a commercially available kit following the manufacturer’s instructions (Omnia Kinase Assay, KNZ3051, Thermo Fisher).
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3

Antibody Characterization for Protein Analysis

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The following antibodies were used in this study for western blot, immunohistochemistry, immunofluorescence staining and immunoprecipitation: YAP1 (Santa Cruz Biotechnology, sc-376,830, 1:100 dilution for western blot; 1:50 dilution for immunohistochemistry and 1:50 dilution for Immunofluorescence staining; Abcam, ab52771, 1:20 dilution for IP), p-YAP1 (Abcam, ab76252, 1:10000 dilution for western blot), α-SMA (Abcam, ab5694, 1:200 dilution for western blot; 1:100 dilution for immunohistochemistry and 1:100 dilution for immunofluorescence staining), FAP (Abcam, ab53066, 1:1000 dilution for western blot and 1:100 dilution for immunofluorescence staining), SRC (Signalway Antibody, #40790, 1:1000 dilution for western blot, 1:100 dilution for immunohistochemistry and 1:100 dilution for immunofluorescence staining), p-SRC (Abcam, ab4816, 1:1000 dilution for western blot), TEAD1 (Abcam, ab133533, 1:20 dilution for IP and 1:500 dilution for western blot), GAPDH (Sungene Biotech, KM9002, 1:5000 dilution for western blot).
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4

Immunohistochemical Analysis of Cell Signaling

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The streptavidin-biotin method was used for immunohistochemical detection. Antigen retrieval was by heat treatment with citrate buffer. Endogenous peroxidase activity was blocked using 2% hydrogen peroxide in PBS. Non-specific protein blocking was with 1% BSA and normal donkey or goat serum. Incubation with primary antibody was overnight at 4°C and the secondary antibody and streptavidin-HRP incubations were at room temperature for 40 minutes each. Primary antibody was replaced with PBS for a negative control. Antigen-antibody complex was visualized with the DAB chromogen. Antibodies were: Ki-67 (ab15580; Abcam; 1:1000), phospho-RB (Ser807/811) (#8516; Cell signaling; 1:200), MCL1 (#39224; Cell signaling; 1:50), phospho-FAK (Tyr397) (#700255, Thermo Fisher, 1:2000), and phospho-Src (Tyr418) (ab4816; Abcam; 1:40). Immunohistochemical scoring was by a pathologist unaware of the prior treatment arms.
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