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4 protocols using ki 67 rm 9106 s1

1

Immunohistochemical Analysis of Murine Tissues

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Tissues were fixed in 4% Paraformaldehyde overnight and embedded in paraffin according to standard procedures. 5μm sections were either stained with Hematoxilin&Eosin or with the following antibodies: CD45R/B220 (ab64100, Abcam), CD3 (ab5690, Abcam), Ki-67 (RM-9106-S1, Thermo Scientific), IgG (BA2000, Vector), BRAF (sc-9002, Santa Cruz), pERK (4373, Cell Signaling), Bcl-6 (5650, Cell Signaling), and Mum1 (sc-6059, Santa Cruz). Organs from at least 5 mice from different litters were used for all stainings.
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2

Immunohistochemistry of Fetal Lung Tissue

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Immunohistochemistry was performed on formalin-fixed, paraffin-embedded human fetal lungs (T21 and non-T21) as previously described [27 (link)]. In brief, paraffin-embedded lungs were sectioned at 5 μm, rehydrated, and then boiled in a sodium citrate antigen retrieval solution for 12 min. A 15-min step in 3% H2O2 was performed to quench endogenous peroxidases to decrease background. Sections were incubated with the following primary antibodies overnight at 4 °C: CD31 (RB-10333-P0, 1:200; Neomarkers, Fremont, CA, USA), CDH1 (610181, 1:200; BD Biosciences, San José, CA, USA), Ki67 (RM-9106-S1, 1:200; Thermo Fisher Scientific, Fremont, CA, USA), LYVE1 (ab14917, 1:100; Abcam, Cambridge, UK), SOX2 (sc-17320, 1:100; Santa Cruz, Dallas, TX, USA), and SOX9 (AB5535, 1:500; Millipore, Burlington, MA, USA). Sections were then stained with appropriate fluorochrome-conjugated secondary antibodies in conjunction with Cy3-ACTA2 conjugated antibody (C6198, 1:200; Sigma-Aldrich, St Louis, MO, USA) when necessary. Slides were counterstained with DAPI (DE571; Life Technologies, Grand Island, NY, USA) and mounted using ProLong Diamond Antifade Mountant (Life Technologies).
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Antibody-Based Tumor and Lineage Analysis

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Antibodies used for tumor analysis include F4/80 (ab6640, Abcam, Cambridge, MA, USA) [99 (link)], EphA2 (C-20, SC-924, Santa Cruz Biotech, Dallas, TX, USA), Ki-67 (RM-9106-S1, Thermo Fisher Scientific, Waltham, MA, USA), SREBP1 (H-160), SREBP2 (H-164), FASN (H-300), and CD31 (CM303A, Biocare Medical, Concord, CA, USA). Antibodies used for lineage analysis were: anti-B220 (RA3-6B2), anti-CD19 (eBio1D3), anti-IgM µ-chain (Jackson Labs), anti-CD43 (S7) for B cells, anti-CD3 (145-2C11), anti-CD4 (GK1.5), anti-CD8a (53-6.7) for T cells, anti-CD41 (MWReg30), anti-CD71 (C2), anti-Ter119 (TER-119), and anti-F4/80 (BM8), anti-Mac1 (M1/70), and anti-Gr1 (RB6-8C5) for myeloid cells. Antibodies used for HSC and progenitor analysis were: Lineage (biotin-conjugated anti-Gr-1 (RB6-8C5), -Mac1 (M1/70), -B220 (RA3-6B2), -CD19 (eBio1D3), -Ter110 (TER-119), -CD5 (53-7.3), -CD4 (GK1.5), -CD8 (53-6.7)), APC-Cy7-c-Kit (2B8), PerCP-cy5.5-Sca1 (E13-161.7 or D7, 1:1000 dilution), FITC-CD48 (HM48-1), PE-Cy7-CD150 (TC15-12F12.2), APC-CD34 (RAM34) and PE–Flk2 (A2F10.1). All antibodies were used at 1:200 dilution unless otherwise noted. FACS antibodies were purchased from eBioscience (San Diego, CA, USA), BD Biosciences (San Jose, CA, USA) or BioLegend (San Diego, CA, USA).
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Immunohistochemical Analysis of Prostate Cancer

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Immunohistochemical analysis of human prostate cancer was conducted using a polyclonal CAMK2N1 antibody 8. Human prostate cancer tissue arrays were purchased from Biomax. FOUR-micrometer sections were prepared from paraffin-embedded C4-2 Tumor tissues derived from nude mice, and tissues were extracted from paraffin. Tumor tissues were stained with primary antibody including Ki67 (RM-9106-S1, Thermo), Bcl-2 (SC-7382, Santa cruz), Bax (SC-7480, Santa cruz), p21 (SC-6246, Santa cruz).
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