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3 protocols using ab6703

1

CD8+ T-Cell Quantification in Murine Tumor

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CT26hEGFR tumors from different treatment groups were collected after 13 days of implantation and fixed in 10% neutral buffered formalin (Sigma-Aldrich) for 48 h. Then, after extensive washing in PBS, tissues were embedded in paraffin, cut at 3 µm, mounted in Superfrost®plus slides, and dried overnight. Slides were deparaffined in xylene and re-hydrated through a series of graded ethanol washes, ending in a final rinse in pure water. Slides were incubated with a rat monoclonal anti-CD8a (1:200 dilution) (OTO94A; Monoclonal Antibodies Core Unit CNIO) followed by a rabbit anti-rat secondary antibody (cat#ab6703, Abcam) and a visualization system (Novolink Polymer anti-Rabbit, Leica) conjugated with HRP. Nuclei were counterstained with Harris’ hematoxylin. Positive control sections known to be primary antibody positive were included for each staining run. Whole digital slides were acquired with a slide scanner (AxioScan Z1, Zeiss), and total versus positive cells were automatically quantified (AxioVision 4.6 software package, Zeiss).
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2

Chromatin Immunoprecipitation from MM2d Cells

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MM2d cells were harvested 4 days after subculture and fixed using ice-cold 1% formaldehyde in PBS and applying vacuum infiltration (three rounds of 6 min on/4 min off). The cross-linking was stopped by the addition of 0.125 M glycine, infiltrating for another 5 min. The grinded material was resuspended in Extraction Buffer (0.25 M sucrose, 10 mM Tris–HCl, pH 8.0, 10 mM MgCl2, 1% Triton X-100, 1 mM PMSF and protease inhibitor cocktail for plant cell extracts (Sigma)). Nuclei were pelleted by centrifugation, resuspended in Lysis Buffer (50 mM Tris–HCl, pH 8.0, 10 mM EDTA, 1% SDS, 1 mM PMSF and protease inhibitor cocktail) and disrupted by sonication in a Bioruptor Plus (Diagenode) for 30–45 cycles of 30 s on and 30 s off, at high power mode. One μg of soluble chromatin was employed per ChIP reaction, using the following antibodies: anti-H3K9me2 (Abcam ab1220, 3 μg), anti-H3K27me1 (Millipore 07-448, 1 μg), anti-total H3 (Abcam ab1791, 2 μg), or anti-rat IgG (Abcam ab6703, 2 μg) as a negative control. Immune complexes were recovered with 50 μl of protein G agarose beads (SCBT) and washed and eluted essentially as described (28 (link)).
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3

Immunohistochemical Analysis of Macrophage Markers

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The spleen of infected and non-infected mice was collected and frozen in tissue-Tek O.C.T freezing medium at −80°C until analysis. Tissues were sectioned at 6 μm, mounted on Superfrost+ glass slides (Fischer Scientific). Splenic sections were fixed in cold solution (−20°C) of 50% acetone (VWR, 20065.293) and 50% methanol (Millipore, 1.06009.5000) for 5 min, then incubated with protein serum free (DAKO, X0909) for 30 min at RT. The sections were then incubated overnight in dark wet room with 100 μl of an anti-macrophage scavenger receptor (MARCO) mAb (ED31, T-2026, BMA Biomedicals, Switzerland) solution (2 μl/mL), followed by a 30 min incubation at RT with 100 μl of a polyclonal rabbit anti-rat Immunoglobulins (ab 6703, abcam, UK) solution (4 μg/mL). Positive staining were revealed using goat anti-rabbit IgG (H+L) Alexa fluor 488 conjugate (A11034, Invitrogen, Belgium), incubated for 2 h at RT. All antibodies were diluted by DAKO real antibody diluent (S2022, DAKO). Slides were washed 3 times for 5 min after each step by distilled water, mounted with ProLong® Gold Antifade Mountant (P10144, Thermofisher, Belgium), viewed and photographed with an Olympus FSX100 inverted microscope.
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