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Facsarray instrument

Manufactured by BD
Sourced in United States

The BD FACSarray instrument is a flow cytometry system designed for cell analysis and sorting. It is capable of detecting and analyzing multiple parameters of cells or particles in a sample. The instrument uses laser-based technology to generate data on various cellular characteristics such as size, granularity, and the expression of specific markers.

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12 protocols using facsarray instrument

1

Nanobody Inhibition of CD28-CD80/CD86 Interaction

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EXAMPLE 42

The potency of cell-expressed CD28 binding Nanobodies to inhibit the interaction of CD28 with either CD80 or CD86 was also ranked using FACS based screening method. In brief, serial dilutions of purified Nanobodies were prepared and incubated at 4° C. with Jurkat cells. To this suspension, either HuCD80-Hu IgG1 Fc fusion protein or HuCD86-Hu IgG1 Fc fusion protein was added 30 minutes after Nanobody incubation had started. After an additional 30 minutes incubation, cells were washed and cell-bound HuCD80-Fc or HuCD86-Fc was detected using a phycoerythrin labeled F(ab′)2 fragment of goat anti human IgG Fc (Jackson Immunoresearch Laboratories, West Grove, Pa., US, Cat #109-116-170). Dead cells were stained by including TOPRO3 vital dye in the final resuspension buffer. All samples were read on a BD FACSarray instrument. Dead cells were excluded from the analysis by gating out TOPRO3 vital dye positive scoring cells. Inhibition of CD80-Fc or CD86-Fc binding to cell-displayed CD28 by these Nanobodies was evaluated in BD FACSarray control software as PE channel histograms.

Results were summarized as mean fluorescence values of these histograms as a function of Nanobody concentration. Results are depicted in FIG. 24.

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2

Flow Cytometry Characterization of hMSCs

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TrypLE‐dissociated hMSC suspensions were stained (as described previously 8) with PE‐ or FITC‐conjugated antibodies against human CD105, CD73, CD90, CD45, CD34, CD49a, CD29, EGF‐R, IGF‐IRα, NGF‐R, PDGFRα, PDGFRβ, CD11b, HLA‐DR, CD19, CD14, CD106, CD146, SSEA‐4, and STRO‐1, or the mouse isotype‐matched controls IgG1κ, IgG2аκ, IgG2bκ, IgM, and IgG3, and analyzed on a BD FACSArray Instrument (BD Biosciences; San Jose, CA; https://www.bdbiosciences.com) and with FlowJo software v7.6.5 (FlowJo; https://www.flowjo.com/). Gates were set for a false‐positive rate of <2% based on the respective isotype control. For each sample, >10,000 events were acquired. All antibodies were purchased from BD Biosciences, except STRO‐1 (generous gift of Prof. Stan Gronthos, University of Adelaide, Australia).
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3

CD28 Binding Nanobody Verification

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EXAMPLE 41

To verify if the CD28-Fc binding clones could also bind to the native form of the CD28 antigen, serial dilutions of purified protein preparations of such clones were allowed to bind to the human Jurkat T-cell line, which expresses human CD28. Binding of putative CD28 reactive Nanobodies clones was detected using unlabeled anti-c-myc tag mouse monoclonal antibody 9E10, followed by a phycoerythrin conjugated F(ab′)2 derived from goat-anti-mouse IgG (human and bovine crossabsorbed), and read on a BD FACSarray instrument. Dead cells were excluded from the analysis by gating out TOPRO3 vital dye positive scoring cells. Binding of the Nanobodies to cells was evaluated in BD FACS array control software as PE channel histograms. Based on these FACS experiments, all CD28-Fc binding Nanobody clones bound cell expressed CD28. Results of a representative experiment are depicted in FIG. 23.

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4

Nanobody-mediated Inhibition of CD28 Interactions

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EXAMPLE 42

The potency of cell-expressed CD28 binding Nanobodies to inhibit the interaction of CD28 with either CD80 or CD86 was also ranked using FACS based screening method. In brief, serial dilutions of purified Nanobodies were prepared and incubated at 4° C. with Jurkat cells. To this suspension, either HuCD80-Hu IgG1 Fc fusion protein or HuCD86-Hu IgG1 Fc fusion protein was added 30 minutes after Nanobody incubation had started. After an additional 30 minutes incubation, cells were washed and cell-bound HuCD80-Fc or HuCD86-Fc was detected using a phycoerythrin labeled F(ab′)2 fragment of goat anti human IgG Fc (Jackson Immunoresearch Laboratories, West Grove, PA, US, Cat #109-116-170). Dead cells were stained by including TOPRO3 vital dye in the final resuspension buffer. All samples were read on a BD FACSarray instrument. Dead cells were excluded from the analysis by gating out TOPRO3 vital dye positive scoring cells. Inhibition of CD80-Fc or CD86-Fc binding to cell-displayed CD28 by these Nanobodies was evaluated in BD FACSarray control software as PE channel histograms.

Results were summarized as mean fluorescence values of these histograms as a function of Nanobody concentration. Results are depicted in FIG. 24.

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5

Quantifying Cytokine Levels in Tumors and Sera

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Human cancer cells were infected with 20 Vp/cell of Ads described in Results section, and media were collected at 48 hours after infection. Media samples were frozen and stored at −80 °C until analysis. After intratumoral injection of a total of 1 × 108 Vp of Ads described in Results section, blood was collected retro-orbitally at different time points, and serum samples were frozen and stored at −80 °C until analysis. Tumors were harvested at 3 and 15 days after injection and washed with PBS. Tumors were homogenized with micropestles (VWR, Radnor, PA) at 4 °C, and supernatants of tumor lysates were isolated via centrifugation at 2,000 rpm for 5 minutes. Human GM-CSF and IL-12p70 in media, sera, and tumor lysates were assayed by using the BD cytokine multiplex bead array system (BD Biosciences, San Jose, CA), and analyzed using a BD Facs Array instrument (BD Biosciences) according to manufacturer’s instructions.30 (link),31 (link) Total protein concentration of each tumor lysate was measured by using Micro BCA protein assay kit (Thermo Scientific, Rockford, IL), and human GM-CSF and human IL-12p70 levels in tumor lysates were calculated per gram of total protein concentration. Murine GM-CSF and IL-12p70 in media of 4T1 cell cultures were measured by a similar manner.
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6

Nanobody Inhibition of CD28 Binding

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EXAMPLE 42

The potency of cell-expressed CD28 binding Nanobodies to inhibit the interaction of CD28 with either CD80 or CD86 was also ranked using FACS based screening method. In brief, serial dilutions of purified Nanobodies were prepared and incubated at 4° C. with Jurkat cells. To this suspension, either HuCD80-Hu IgG1 Fc fusion protein or HuCD86-Hu IgG1 Fc fusion protein was added 30 minutes after Nanobody incubation had started. After an additional 30 minutes incubation, cells were washed and cell-bound HuCD80-Fc or HuCD86-Fc was detected using a phycoerythrin labeled F(ab′)2 fragment of goat anti human IgG Fc (Jackson Immunoresearch Laboratories, West Grove, Pa., US, Cat #109-116-170). Dead cells were stained by including TOPRO3 vital dye in the final resuspension buffer. All samples were read on a BD FACSarray instrument. Dead cells were excluded from the analysis by gating out TOPRO3 vital dye positive scoring cells. Inhibition of CD80-Fc or CD86-Fc binding to cell-displayed CD28 by these Nanobodies was evaluated in BD FACSarray control software as PE channel histograms.

Results were summarized as mean fluorescence values of these histograms as a function of Nanobody concentration. Results are depicted in FIG. 24.

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7

CD28 Nanobody Binding Inhibition Assay

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EXAMPLE 42

The potency of cell-expressed CD28 binding Nanobodies to inhibit the interaction of CD28 with either CD80 or CD86 was also ranked using FACS based screening method. In brief, serial dilutions of purified Nanobodies were prepared and incubated at 4° C. with Jurkat cells. To this suspension, either HuCD80-Hu IgG1 Fc fusion protein or HuCD86-Hu IgG Fc fusion protein was added 30 minutes after Nanobody incubation had started. After an additional 30 minutes incubation, cells were washed and cell-bound HuCD80-Fc or HuCD86-Fc was detected using a phycoerythrin labeled F(ab′)2 fragment of goat anti human IgG Fc (Jackson Immunoresearch Laboratories, West Grove, Pa., US, Cat #109-116-170). Dead cells were stained by including TOPRO3 vital dye in the final resuspension buffer. All samples were read on a BD FACSarray instrument. Dead cells were excluded from the analysis by gating out TOPRO3 vital dye positive scoring cells. Inhibition of CD80-Fc or CD86-Fc binding to cell-displayed CD28 by these Nanobodies was evaluated in BD FACSarray control software as PE channel histograms.

Results were summarized as mean fluorescence values of these histograms as a function of Nanobody concentration. Results are depicted in FIG. 24.

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8

Cytokine Profiling of Splenocyte-A20 Co-culture

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Splenocyte/A20 cultures were incubated at 37°C and 5% CO2 for 72 h. Culture supernatant was collected and secreted IFN-γ, TNF, IL-1β, IL-2, IL-4, IL-5, IL-6, IL-10, IL-12p70, and IL-13 cytokines assayed using the mouse cytometric bead array flex kit (BD Biosciences, USA) following the manufacturer's protocol. Samples were analyzed using a FACSArray instrument (BD Biosciences, USA) using the CBA array software (BD Biosciences, USA).
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9

Cytokine Secretion Profiling in Splenocyte/A20 Co-cultures

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Splenocyte/A20 cultures were incubated at in 96-well U-bottom plates in 200 μl of complete media at 37°C and 5% CO2 for 72 h. Culture supernatant was collected and stored at −80°C prior to assay. Secreted IFN-γ, TNF, IL-1β, IL-2, IL-4, IL-5, IL-6, IL-10, IL-12p70, and IL-13 cytokines were analyzed using the mouse cytometric bead array flex kit (BD Biosciences, USA) following the manufacturer's protocol. Samples were acquired using a FACSArray instrument (BD Biosciences, USA) and data analyzed using the CBA array software (BD Biosciences, USA).
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10

Mammary Gland Protein Extraction and Cytokine Analysis

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Hundred microliters of mammary gland homogenate were mixed with 200 µl lysis buffer supplemented with protease inhibitors (200 mM NaCl, 10 mM Tris-HCl pH 7.4, 5 mM EDTA, 1% Nonidet P-40, 10% glycerol, 1 mM oxidized L-glutathion, 100 µM PMSF, 2.1 µM leupeptin and 0.15 µM aprotinin) to extract cellular proteins. The suspensions rested overnight at −20°C, were centrifuged (12.250 g) for 1 h and finally the supernatant was centrifuged for another 30 minutes (min) to precipitating the pellet. The protein concentration in the supernatant was spectrophotometrically (Genesys 10S) determined with Bio-Rad Protein Assay (Biorad). Cytokine quantification in the lysates and serum was performed with specific Cytometric Bead Array kits (CBA, Becton Dickinson) for mouse IL-6, MCP-1, TNF-alpha, and IL-1alpha and specific Aimplex multiplex assay kits (YSL Bioprocess Development Co.) with minor modifications for mouse KC and MIP-2 on a FACSArray instrument (Becton Dickinson). Fifty μg lysate or ¼ diluted serum were applied to each well.
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