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Alexa fluor 568 and 647

Manufactured by Thermo Fisher Scientific

Alexa Fluor 568 and 647 are fluorescent dyes developed by Thermo Fisher Scientific. These dyes are designed for use in various biological and biochemical applications, such as immunoassays, flow cytometry, and fluorescence microscopy. Alexa Fluor 568 has an excitation maximum at 578 nm and an emission maximum at 603 nm, while Alexa Fluor 647 has an excitation maximum at 650 nm and an emission maximum at 668 nm. The specific properties and recommended uses of these dyes should be referred to in the product documentation provided by Thermo Fisher Scientific.

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2 protocols using alexa fluor 568 and 647

1

Imaging Cellular Structures in S2 Cells

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S2 cells transiently expressing CD8-GFP were grown on concanavalin A–coated (0.5 mg/ml; EMD Millipore) glass coverslips at 25°C in Schneider’s insect medium (Gibco) + 10% FBS (Invitrogen) and fixed with 4% paraformaldehyde for 10 min and subsequently extracted with 0.1% Triton X-100 for 10 min. After short washes in PBS and blocking with 10% FBS, cells were incubated with mouse anti-lamin Dm0 (clone ADL67, 1:50; Developmental Studies Hybridoma Bank) and rat anti–α-tubulin (YOL1/34, 1:100; Serotec), followed by short washes in PBS and incubation with Alexa Fluor 568 and 647 (1:1,000; Invitrogen). DNA was counterstained with DAPI (1 µg/ml; Sigma-Aldrich) before coverslips were mounted in 90% glycerol + 10% Tris, pH 8.5, + 0.5% N-propylgallate on glass slides. Images were acquired on an AxioImager Z1 (100×, Plan Apochromatic oil DIC objective lens, 1.4 NA; all from Carl Zeiss) equipped with a charge-coupled device (CCD) camera (ORCA-R2; Hamamatsu Photonics) using the Zen software (Carl Zeiss) and blind deconvolved using Autoquant X (Media Cybernetics). Images were processed (contrast adjustments) in Adobe Photoshop CS4 (Adobe) and represent either maximum intensity projections of deconvolved z stacks (step size: 0.22 µm; DAPI; α-tubulin) or a single slice (CD8-GFP; lamin Dm0).
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2

Immunostaining of Drosophila Imaginal Discs

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Drosophila-Patched, apa1 (Developmental Studies Hybridoma Bank (DSHB)) (1:50); Drosophila-Wingless, 4D4 (DSHB) (1:50); Drosophila-Armadillo, N2-7A1 (DSHB) (1:50); Phospho-MAPK (ERK1/2), #4370 (Cell Signaling Technologies) (1:100). AlexaFluor 568 and 647 (Invitrogen) conjugated secondary antibodies were used as necessary at (1:500) dilution. Tissues were counterstained with DAPI (Millipore Sigma, #D9542) (1 µg/ml).
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