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18 protocols using 2 2 dimethoxypropane

1

Synthesis of Functional Polymers

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Acetone and ethanol were purchased from Carl Roth. Acetonitrile, 2,2-dimethoxypropane, p-toluenesulfonic acid, tetrahydrofuran and sodium chloride (98%) were purchased from Sigma Aldrich (Taufkirchen, Germany). Acryloyl chloride (96%) was purchased from Merck (Darmstadt, Germany). Azobis(isobutyronitril) (98%), triethylamine and trifluoroacetic acid were purchased from Acros Organics (Geel, Belgium). Dichlormethane, diethylether, ethyl acetate, methanol, hexane and dimethylformamide were purchased from VWR Prolabo (Darmstadt, Germany). Dopamine hydrochloride (99.96%) and glycinamide hydrochloride were purchased from BLD Pharmatech (Kaiserslautern, Germany). Hydroquinone was purchased from J.T. Baker (Phillipsburg, NJ, USA). Potassium carbonate, lithium hydroxide and magnesium sulfate were purchased from Fisher Scientific. Methyl trifluoroacetate was purchased from Fluorochem (Hadfield, UK). N-[3-(Dimethylamino)propyl]acrylamide (98%) and N-(2-hydroxyethyl)acrylamide (98%) were purchased from TCI (Tokyo, Japan). Sodium hydrogencarbonate, hydrochloric acid (37%) and toluene were purchased from VWR Chemicals.
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2

Organic Synthesis Reagent Procurement

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Sucrose and diisopropyl azodicarboxylate (DIAD) were purchased from Fluorochem (Hadfield, UK). Triphenylphosphine (PPh3) and oxalyl chloride [(CO)2Cl2] were purchased from Alpha Aesar (Ward Hill, MA, USA). Lactose monohydrate, p-toluene sulfonic acid, 2,2-dimethoxypropane, tetrafluoro boric acid diethyl ether complex [HBF4.Et2O], phenylacetic acid, p-biphenyl acetic acid, p-phenyl benzoic acid, acetone [CH3C(O)CH3], dimethylformamide (DMF), dimethyl sulfoxide (DMSO), methanol (CH3OH), and methylene chloride (CH2Cl2) were purchased from Sigma-Aldrich (Milan, Italy).
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3

Lipase-Catalyzed Fatty Acid Esterification

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Decanoic, lauric, myristic and palmitic acids were purchased from TCI (Zwijndrecht, Belgium), lactose monohydrate from Carlo Erba (Milan, Italy), while Lipozyme® (immobilized from Mucor miehei), p-toluenesulfonic acid, 2,2-dimethoxypropane, tetrafluoroboric acid diethyl ether complex, carbonyl cyanide 4-(trifluoromethoxy) phenylhydrazone (FCCP) and all organic solvents used in this study were purchased from Sigma-Aldrich (Milan, Italy). Prior to use, acetonitrile was dried with molecular sieves with an effective pore diameter of 4 Å and toluene was saturated with water. CellEvent™ caspase-3/7 green detection reagent was purchased from Thermo Fisher Scientific (Waltham, MA, USA) and the CellTox™ green cytotoxicity assay acquired from Promega (Madison, WI, USA). The JC-1 probe (5,5′,6,6′-Tetrachloro-1,1′,3,3′-tetraethylbenzimidazolylcarbocyanine, iodide) was purchased from Biotium (Fremont, CA, USA).
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4

Lipid Extraction and Methyl Esterification

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Chemicals used in this study were: Yeast Extract (Biokar Diagnostics, France); Peptone (Biokar Diagnostics, France); Glucose (Sigma, Germany); Chlormaphenicol (Biomatik, USA); Ethyl Methane Sulfonate (Sigma, Germany); Sodium Thiosulfate (Sigma, Germany); Sodium Phosphate (Sigma, Germany); Sodium Chloride (Sigma, Germany); 2,6-Di-tert-butyl-4-methylphenol (BHT) (Sigma, Germany); Methanol (Carlo-Herba, France); Hydrochloric acid 37% (Carlo Herba, France); n-Hexane (VWR chemical, France); Dichloromethane (VWR chemical, France); 2,2-dimethoxypropane (Sigma, Germany); Hydrochloric acid solution (Sigma, Germany); Sodium Methoxide solution (Sigma, Germany) and Nonadecanoic acid (Sigma, Germany).
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5

β-D-Pseudouridine Derivatization and Characterization

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To a solution of β-D-pseudouridine (Berry & Associates; 400 mg, 1.64 mmol) and 2,2-dimethoxypropane (Sigma-Aldrich; 12 ml) in dimethylformamide (8 ml), concentrated HCl (80 μL) was added, and the reaction mixture was stirred 5 h at room temperature. After neutralization with 2.5 M NaOH, solvent was removed under vacuum. 1H-NMR (400 MHz, D2O, δ-H): 1.35 (s, 3H, CH3), 1.56 (s, 3H, CH3), 3.67 (dd, 1H, J = 12.2, 5.65 Hz, H-5′), 3.75 (dd, 1H, J = 12.2, 3.75 Hz, H-5′), 4.11 (dd, 1H, H-4′), 4.75 (m, 2H), 4.86 (m, 1H), 7.62 (s, 1H, H-6).
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6

Saccharified Germinated Brown Rice Production

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The BR was used in this experiment was harvested in Jeongeup, Korea, and processed in an agricultural cooperative in 2010. The yogurt starter used in this experiment was a mixed commercial culture, YC-X11 (Chr. Hansen, Denmark), and it contained Lactobacillus bulgaricus and Streptococcus thermophilus. Enzymes producing saccharified germinated brown rice (SGBR) were α-amylase (ADN 04260, novozymes, Denmark), which originated from Bacillus amyloliquefaciens, and β-amylase (AMS30032, Novozymes, Denmark), which originated from Aspergillus niger. They were used for liquefaction and saccharification of GBR, respectively. Reagents to analyze the functional properties of GBR and fermented milk, such as methanol (99.9%), n-heptanes (99%), benzene (99.9%), 2,2- dimethoxypropane (98%), 2-mercaptoethanol (98%), potassium borate (99.5%), and phthaldialdehyde, were purchased from Sigma-Aldrich Co. (USA).
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7

Comprehensive Analysis of Food Bioactive Compounds

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Authentic standards for carotenoids (lutein, α-carotene, and β-carotene), free sugars (glucose, fructose, and sucrose), ascorbic acid, and phytosterols (campesterol, β-sitosterol, and stigmasterol) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Fatty acid methyl esters were obtained from Supleco (Bellefonte, PA). Vitamin E standards were purchased from Merck (Darmstadt, Germany). High-performance liquid chromatography (HPLC) grade methanol, acetonitrile, ethanol, chloroform, n-hexane, iso-octane (2,2,4-trimethyl pentane), benzene, hydrochloric acid (HCl), and water were obtained from Avantor Performance Materials (Center Valley, PA, USA). Metaphosphoric acid, formic acid, acetic acid, Folin’s reagent, sodium carbonate (Na2CO3), gallic acid, aluminum chloride hexahydrate (AlCl36H2O), sodium nitrite (NaNO2), sodium hydroxide (NaOH), catechin hydrate, 2,2-dimethoxy propane, n-heptane, sulfuric acid (H2SO4), anhydrous sodium sulfate (Na2SO4), acetic acid, ferric chloride hexahydrate (FeCl36H2O), potassium hydroxide (KOH), sodium acetate trihydrate (C2H3NaO23H2O), (±)-6-hydroxy-2,5,7,8-tetramethylchromane-2-carboxylic acid (Trolox), 2,4,6-Tris(2-pyridyl)-s-triazine (TPTZ), and 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt were obtained from Sigma-Aldrich.
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8

Comprehensive Analytical Procedure for Bioactive Compounds

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All chemicals used for the extraction and analysis of FAs, VitE, and phenolic compounds were of the HPLC-grade or at least ACS analytical grade. Acetonitrile, ethanol, methanol (MeOH), and iso-octane were obtained from Thermo Fisher Scientific (Waltham, MA, USA). Deionized water was generated using the PURELAB Option-Q System (ELGA Lab Water, High Wycombe, UK). Potassium hydroxide, benzene, formic acid, and heptane were purchased from Junsei (Tokyo, Japan). Hexane was purchased from Kanto Chemical Co., Inc. (Tokyo, Japan). Dichloromethane, 2,2-dimethoxypropane, and dimethyl sulfoxide were purchased from Sigma-Aldrich Corp (St. Louis, MO, USA). Sulfuric acid, sodium sulfate anhydrous, and 0.1 N hydrochloric acid were purchased from Daejung Chemical and Materials Co., Ltd. (Gyeonggi-Do, Korea). Ascorbic acid was obtained from SANCHUN Chemical Co., Ltd. (Gyeonggi-Do, Korea). The 37 fatty acid methyl ester (FAME) standard mixture, pentadecanoic acid (C15:0, internal standard), VitE (4 tocopherols and 4 tocotrienols), and phenolic standards (STDs) were phurchased from Sigma-Aldrich Co. We obtained 2,2-diphenyl-1-picrylhydrazyl (DPPH) from Alfa Aesar (Ward Hill, MA, USA).
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9

High-Resolution Cryogenic Electron Microscopy

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Cells were high-pressure frozen with 1-hexadecane (Sigma-Aldrich) as
cryoprotectant and freeze-substituted with 2% (w/v) osmium tetroxide
(Electron Microscopy Sciences) and 8% (v/v) 2,2-dimethoxypropane
(Sigma-Aldrich) in acetone for 5 days at −85 °C. Samples were
warmed-up to room temperature over 2 days and embedded in Spurr's resin
over 4 days. Resulting resin blocks were sectioned to ∼130 nm using a
Leica UC-6 microtome. Thin sections were collected in pre-cooled ethylene glycol
and mounted on copper grids. Dark-field electron imaging, EELS and EDX
spectroscopy were performed on a Tecnai G2 F20 X-Twin microscope equipped with a
field-emission electron source (operated at 200 kV), a Fishione HAADF
detector at 330 mm camera length (diffraction contrast+Z contrast)
for image acquisition in the STEM mode, a Gatan Tridiem imaging filter for
acquisition of energy-filtered images and an EDAX Genesis X-ray analyser.
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10

Synthesis of Polyurethane Microcapsules

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Toluene 2,4-diisocyanate (TDI) (Sigma Aldrich, St. Louis, MO, USA), glycerol (Sigma Aldrich, St. Louis, MO, USA), 1,4-butanediol (Merck, Darmstadt, Germany), 1,6-hexanediol (Merck, Darmstadt, Germany), and chlorobenzene (Merck, Darmstadt, Germany) were used for the preparation of TDI-prepolymers, and cyclohexanone (ABCR, Karlsruhe, Germany) was used as a solvent. For the microcapsule synthesis, isophorone diisocyanate (IPDI) (Sigma Aldrich, St. Louis, MO, USA) was used as a core material, gum arabic (GA) (Sigma Aldrich, St. Louis, MO, USA) was used as a surfactant and cyclohexanone (ABCR, Karlsruhe, Germany), was used as a solvent. For the coating’s preparation, polyol (LUMIFLON LF9716 fluoropolymer consisting of alternating fluoroethylene and vinyl ether segments with an OH value of 170 KOH/g, AGC Chemicals, Exton, PA, USA) and diisocyanate (Desmodur N3900 aliphatic isocyanate resin based on hexamethylene diisocyanate, Convestro, Leverkusen, Germany) were used, and 2,2-dimethoxypropane (Sigma Aldrich, St. Louis, MO, USA) was used as a thinner.
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