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52 protocols using hanks balanced salt solution (hbss)

1

Isolation and Culture of Neonatal Mouse Muscle Cells

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Timed-pregnant mice and mouse colonies for timed matings were maintained as above, and all procedures were IACUC-approved. Muscle from the limbs of neonatal mice less than 24 h old was dissected away from other tissues into Hanks' balanced salt solution (HBSS; Corning, #21-023-CV), the HBSS was aspirated, and the muscle was minced with sterile scissors and incubated in freshly prepared 2% Type II collagenase (Worthington Biochemical, #LS004174) in HBSS for 30 min with vortexing every 10 min. Cells were pelleted by centrifugation at 1800 × g for 5 m at room temperature, resuspended in HBSS, and re-pelleted as above. Cells were resuspended in DMEM supplemented to contain 6% FCS, 2 mM L-glutamine (Corning #25-005-Cl), and 10 μg/ml gentamycin, and passed through a 100 μm cell strainer (Falcon, #352360). Cells were resuspended in supplemented DMEM and plated in 8-well poly-D-lysine-coated chamber slides for immunofluorescent microscopy. After incubation at 37°C in 5% CO2 for two days, media was replaced with DMEM supplemented as above (for undifferentiated skeletal muscle cell cultures) or DMEM supplemented as above but at 3% instead of 6% FCS (for differentiated skeletal muscle cell cultures). Cultures were incubated an additional two days before use to allow differentiation, and were never passaged.
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2

Isolation of intestinal mesenchymal cells

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Mesenchymal cells were isolated from the pooled proximal halves of the small intestine from 3–6 wildtype or PdgfraH2B-eGFP pups. Timepoints harvested from wildtype tissue include P1, P4, P5, P9, and P14, and from GFP+ isolated PdgfraH2B-eGFP tissue include P2, P5, and P14. After manual stripping of external muscles (MP) and serosa, whole adult Myh11Cre(ER-T2);R26RL-L-TdTom; PdgfraH2B-eGFP SI or colon was processed as described.30 (link) Epithelium was denuded by shaking the tissue for 20 min at 37oC in pre-warmed HBSS (Life Technologies) containing 10 mM EDTA. The remaining tissue was rinsed with HBSS, minced using a scalpel, and digested with gentle rocking for 1 h at 37oC in 3 mg/mL collagenase II (Worthington, LS004176) diluted in HBSS containing 5% fetal bovine serum (FBS). Extracted cells were centrifuged at 300 g for 5 min, washed with FACS buffer (PBS containing 0.1% BSA), and leukocytes were depleted in ACK Lysis buffer (Gibco) for 3 min. Washed cells were suspended in FACS buffer and, to deplete epithelial and immune populations, stained with conjugated EPCAM (BioLegends, 118214, 1:100) and CD45 (eBiosciences, 17–0451-82, 1:100) Ab for 20 min at 4°C. Cells were sorted on a FACSAria IIII flow cytometer, with gating against DAPI (BD Pharmingen) to identify live cells. Graphs of isolated cell fractions were generated using FlowJo software v10.
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3

Isolation of Olfactory Sensory Neurons

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Mice were euthanized according to our IACUC protocol, and then main olfactory epithelia were dissected and quickly immersed in ice-cold HBSS (Worthington). Olfactory epithelia were separated from the bone under a dissection microscope and then were minced into small pieces using forceps. Each epithelium was then washed once with HBSS and resuspended in 2 ml of EBSS containing papain (20 U/mL, Worthington) and DNase I (2000 U/mL, Worthington). After 40 minutes of incubation with gentle agitation at 37°C, the suspension was washed with 5 ml of PBS + 0.02% BSA twice and passed through a 30 μm cell strainer (Miltenyi Biotec).
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4

Isolation of Adult Mouse Cardiac Fibroblasts

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Adult mouse cardiac fibroblasts were isolated, as described earlier [14 (link)]. In brief, 10–12 weeks old mice were euthanized, hearts were excised and rinsed with cold Hank’s Balanced Salt Solutions (HBSS, Corning, Cat#MT21023CV). Ventricles were cut in small pieces (1mm) and digested in HBSS containing 150 unit/mL of Collagenase Type 2 (Worthington, Cat# LS004176) and 0.6 mg/mL Trypsin (USB Corp., Cat#22705) at 37°C for 15 minutes. The digested supernatant was collected and spun down at 400xg for 5 minutes. Cell pellets were resuspended in DMEM supplemented with 10% FBS, 1% penicillin/streptomycin, and 1% Non-Essential Amino Acids. The cell suspension was passed through a 70-micron cell strainer, and flow-through cell suspension is cultured in a cell culture dish at 37°C and 5% CO2. After 2h, media was removed and replaced with fresh media. The neonatal rat ventricular myocytes (NRVMs) were isolated and cultured as described earlier [15 ].
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5

Isolation of Intestinal Mononuclear Cells

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Colon was removed and placed in cold Ca2+, Mg2+-free Hank’s balanced salt solution (HBSS; Gibco). After removal of the mesentery, the colon was opened longitudinally, thoroughly washed in HBSS and cut into small pieces. The dissected mucosa was incubated with HBSS containing 1 mM dithiothreitol (Sigma-Aldrich) and 5 mM EDTA (Quality biological) for 30 min at 37°C to remove the epithelial layer. The pieces of intestine were washed and placed in HBSS containing 1.5% FBS, 200 U/mL collagenase Type 3 and 0.01 mg/mL DNase (all Worthington Biochemical Corporation) for 1 h at 37°C. The digested tissues were washed, resuspended in 40% Percoll (GE Healthcare) and overlaid on a 75% Percoll fraction. Percoll gradient separation was performed by centrifugation at 700 × g for 20 min at room temperature. Mononuclear cells were collected at the interphase, washed, and resuspended in staining buffer containing PBS, 0.5% BSA, 2 mM EDTA for flow cytometry or RPMI-1640 medium (Sigma-Aldrich) containing 10% FBS.
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6

Isolation of Intestinal Mononuclear Cells

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Colon was removed and placed in cold Ca2+, Mg2+-free Hank’s balanced salt solution (HBSS; Gibco). After removal of the mesentery, the colon was opened longitudinally, thoroughly washed in HBSS and cut into small pieces. The dissected mucosa was incubated with HBSS containing 1 mM dithiothreitol (Sigma-Aldrich) and 5 mM EDTA (Quality biological) for 30 min at 37°C to remove the epithelial layer. The pieces of intestine were washed and placed in HBSS containing 1.5% FBS, 200 U/mL collagenase Type 3 and 0.01 mg/mL DNase (all Worthington Biochemical Corporation) for 1 h at 37°C. The digested tissues were washed, resuspended in 40% Percoll (GE Healthcare) and overlaid on a 75% Percoll fraction. Percoll gradient separation was performed by centrifugation at 700 × g for 20 min at room temperature. Mononuclear cells were collected at the interphase, washed, and resuspended in staining buffer containing PBS, 0.5% BSA, 2 mM EDTA for flow cytometry or RPMI-1640 medium (Sigma-Aldrich) containing 10% FBS.
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7

Isolation of Murine Lung Cells

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Before extraction, lungs were perfused with 30 ml normal saline through right ventricle of the heart under 2% isoflurane inhalation anesthesia. Lung tissues were harvested from mice and filled with Ca++ and Mg++ free Hank’s balanced salt solution (HBSS) (Corning; Corning, NY).
They were sliced into small pieces by sterile surgical blade and were digested in HBSS supplemented with 100 U/ml of collagenase I (Worthington Biochemical, Lakewood, NJ) for 30 min at 37 °C with periodic shaking. The resultant fragments were meshed by a 70 µm cell strainer (Corning) and a 10 ml syringe plunger and washed with HBSS. The remaining red blood cells were lysed with lysing buffer (BD Biosciences, San Jose, CA). The numbers of isolated lung cells were counted using a microscope (Eclipse TS100; Nikon, Tokyo, Japan).
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8

Purification of Mouse Liver Cells

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Mouse liver cells purification protocol was adapted from refs. 31 (link),32 (link). Briefly, liver cells were isolated following a two-step protocol of Pronase/Collagenase digestion. Firstly, the liver was perfused with HBSS (Sigma #H6648) containing 0.2 mg/mL EDTA. Secondly, a perfusion with 0.4 mg/mL Pronase (Sigma #P5147) and 2 mg/mL Collagenase Type II (Worthington #LS004196) in HBSS was performed. Finally, the liver was perfused with HBSS containing 0.4 mg/mL Pronase, 2 mg/mL Collagenase Type II and 0.1 mg/mL DNase I (Roche #R104159001). The liver was minced and further digested with HBSS containing 0.4 mg/mL Pronase, 2 mg/mL Collagenase Type II and 0.1 mg/mL Dnase I for 25 min with shaking at 37 °C. To stop digestion, DMEM (Thermo Fisher #31966047) was added. The resulting liver cell suspension was filtered and washed three times through centrifugation at 300 g for 4 min in 2% FBS-PBS. The suspension was then subjected to density gradient centrifugation using 20% Percoll (GE Healthcare #17-0891-01) to remove dead cells. Resuspension of the cells in ACK lysis buffer (Thermo Fisher #A1049201) allowed the lysis of red blood cells. Cell suspension was then centrifuged and resuspended in 2% FBS-PBS to proceed with scRNA-seq analysis using 10X Genomics Chromium Single-Cell 3’ according to the manufacturer’s instructions.
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9

Isolation of Intestinal Lamina Propria Mononuclear Cells

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Lamina propria mononuclear cells (LPMCs) were isolated from intestinal specimens using modifications of a previously described technique.6 (link) Briefly, dissected mucosa samples were incubated in calcium and magnesium-free HBSS (Sigma-Aldrich, St. Louis, MO, USA) containing 2.5% heat-inactivated FBS (BioSource International, Camarillo, CA, USA) and 1 mM DTT (Sigma-Aldrich) to remove mucus. The mucosa was then incubated twice in HBSS containing 1 mM EDTA (Sigma-Aldrich) for 45 minutes at 37℃. Tissues were collected and incubated in HBSS containing 1 mg/mL collagenase type 3 and 0.1 mg/mL DNase I (Worthington Biochemical, Lakewood, NJ, USA) for 60 minutes at 37℃. The fraction was pelleted and resuspended in 40% Percoll solution (Amersham Biosciences) and layered onto 60% Percoll before centrifugation at 2000 rpm for 20 minutes at room temperature. Viable LPMCs were recovered from the 40% to 60% layer interface.
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10

Enzymatic Dissociation of Tooth Germs for Culture

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Organ cultures were created according to a previous report (Baba, Terashima, Oida, & Sasaki, 1996) . A schematic figure of the method and histological views are shown in Fig. 2. In brief, ICR mouse embryos 16.5 days in utero were aseptically removed from pregnant females (vaginal plug = day 0). The mandibular first molar germs were dissected from the surrounding tissues under a dissecting microscope and rinsed several times with serum-free HBSS (GIBCO Laboratories, Grand Island, NY) The epithelial and mesenchymal components of the tooth germs were enzymatically dissociated by incubation in HBSS solution containing 60 units/ml collagenase (CLS II type: Worthington Biochemical Corporation, NJ) for 70 min at 37°C. The components and non-separated tooth germs were then cultured on Millipore filter (pore size, 0.45um) supported by a stainless metal grid. After the organ culture, dissociated components alone and intact tooth germs without a prior enzymic treatment were analyzed with reverse transcriptionpolymerase chain reaction (RT-PCR) or morphological observation.
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