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Lamin b1

Manufactured by Santa Cruz Biotechnology
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Lamin B1 is a structural protein that is a component of the nuclear lamina, a protein network that provides mechanical support and organization to the cell nucleus. Lamin B1 is involved in the maintenance of nuclear structure and function.

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108 protocols using lamin b1

1

Extracellular Vesicle Characterization Protocol

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Nanoparticle tracking analysis was performed to determine the size and particle concentration of EVs using an NS300 (Malvern Panalytical, Malvern, UK). Briefly, the samples were appropriately diluted (1:100–1:10,000) in particle-free phosphate buffer saline to achieve suitable concentrations. For immunoblotting, cells lysed in RIPA buffer or isolated exosomes were electrophorized using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto nitrocellulose membranes. Thereafter, the membranes were blocked with 5% skim milk in Tris-buffered saline containing 0.1% Tween-20 (TBS-T) and incubated with primary antibodies against target protein (srIκB, CRY2), exosome positive marker, and exosome negative marker overnight at 4 °C. The following primary antibodies were used in immunoblotting studies: srIκB, CRY2 (customized antibody from Abclon, Seoul, Republic of Korea), CD9, CD81 (SBI, Tokyo, Japan), TSG101, alix, GM130, calnexin (Abcam, Cambridge, UK), lamin B1, GAPDH (Santa Cruz Biotechnology, Dallas, TX, USA), and prohibitin (NOVUSBIO, Centennial, CO, USA). Following incubation with specific secondary antibodies, the blots were developed using Clarity and Clarity Max ECL western blotting substrates and visualized using a ChemiDoc imager.
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2

Western Blotting Analysis of Nuclear Proteins

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For western blotting, 20–35 μg protein was separated on 6% or 10% polyacrylamide gels and transferred on polyvinylidene fluoride membranes using the TransBlot Turbo system (Bio-Rad). For antibody-based staining, the membrane was washed once with TBS-T (10 mM Tris, pH 8.0, 150 mM NaCl and 0.1% Tween-20), blocked with 5% non-fat dry milk in TBS-T and stained with primary antibodies against ATF7IP (Bethyl, A300-169A), ZMYM2 (Bethyl, A301-711A-M), or LAMIN B1 (Santa Cruz Biotechnology, 374015) at 4 °C overnight. Next day, membranes were washed three times with TBS-T for 10 min before incubation with species-specific horseradish peroxidase-conjugated secondary antibodies for 1 h at room temperature. After additional three washes with TBS-T for 10 min each, signal was detected using the Amersham ECL Western blotting detection reagent (GE Healthcare Life Sciences; RPN2109) and exposure on Amersham Hyperfilm ECL (GE Healthcare Life Sciences; 28906836) in a darkroom.
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3

Antibody Immunoblotting for Cellular Signaling

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We used the following antibodies and dilutions for this study: ubiquitin (catalogue (cat.) no. 3936S, Cell Signaling Technology; 1:20:00), ISG15 (cat. no. HPA004627, Sigma Aldrich/Merck; 1:1,000), GAPDH (cat. no. 2118, Cell Signaling Technology; 1:2,000), GFP trap beads (cat no. gta-100, ChromoTek), GFP (cat. no. sc-9996, Santa Cruz Biotechnology; 1:2,000), IRF3 (cat. no. 4302, Cell Signaling Technology; 1:2,000), phospho-IRF3(Ser396) (cat. no. 4947, Cell Signaling Technology; 1:1,000), IκBα (cat. no. 4812, Cell Signaling Technology; 1:2,000), phospho-IκBα(Ser32/36) (cat. no. 9246, Cell Signaling Technology; 1:1,000), TBK1 (cat. no. 3013, Cell Signaling Technology; 1:2,000), pTBK1 (cat. no. 3300-1 Epitomics; 1:1,000), NF-κB p65 (cat. no. 8008, Santa Cruz Biotechnology; 1:2,000), lamin B1 (cat. no. sc-373918, Santa Cruz Biotechnology; 1:2,000).
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4

UV-Induced Keratinocyte Lamin and Actin

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Primary human keratinocytes were seeded on glass cover slips in 6 cm dishes and incubated for 24 hours prior to UV irradiation. At 3 days post UV irradiation, cover slips were fixed with 2% paraformaldehyde for 15 mins, followed by incubation with primary antibodies lamin B1 (YenZym), lamin A/C (Santa Cruz, SC-6215), actin (Sigma, A5441) for 1 hour and secondary antibodies and DAPI for 30 mins. Slides were mounted in Prolong-Gold Anti-fade reagent (Invitrogen) and immunofluorescence images acquired on a Olympus FV1000 inverted confocal laser scanning microscope.
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5

Immunoblotting of T Cell Lysates

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Total lymphocytes or cell-sorted naive CD4+ T cell lysates (15 μg) were resolved by 5% SDS-PAGE and transferred to nitrocellulose (BioRad). Membranes were probed with primary antibodies against Talin-1 (Sigma-Aldrich) or Lamin B1 (Santa Cruz) overnight at 4°C. Signals were detected using a horseradish peroxidase–labeled anti-mouse IgG (BioRad) and enhanced chemiluminescence (ECL; PerkinElmer) on HyBlot CL film (Harvard Apparatus).
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6

CB2R Agonist and Antagonist Study

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Paeoniflorin (> 98% purity) was obtained from Shanghai Daibo Chemical Technology Co., Ltd (Shanghai, China); HU308 (a selective CB2R agonist) and AM630 (a selective CB2R antagonist) were obtained from Cayman Chemicals (Ann Arbor, MI, USA). CB2R antibody was obtained from Thermo Fisher Scientific Inc. (Waltham, MA, USA), NF-κB p65 antibody was obtained from Abcam Inc (Cambridge, MA, UK), Phospho-Akt (Ser473), Akt, mTOR, Phospho-mTOR (Ser2448) and Phospho-IκBα (Ser32) antibodies were obtained from Cell Signaling Technology Inc. (Beverly, MA, USA), iNOS, CD206, IκBα and lamin B1 antibodies were obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA), CD68 antibody was obtained from AbD Serotec (Kidlington, Oxford, UK), Iba1 was from Wako Pure Chemical (Osaka, Tokyo, Japan), and phospho-PI3K p85α (Tyr467)/phospho-PI3K p55γ (Tyr199), PI3K and β-actin antibodies were obtained from Bioworld Technology Inc. (Minneapolis, MN, USA). An NO assay kit was obtained from Beyotime Institute of Biotechnology (Jiangsu, China).
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7

Antibody-based detection of nuclear and synaptic proteins

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The primary antibodies used were rabbit polyclonal LAP1 [11] (link); rabbit polyclonal lamin B1 (Santa Cruz Biotechnology); mouse monoclonal β-tubulin (Invitrogen); mouse monoclonal synaptophysin (Synaptic Systems); rabbit polyclonal CBC3C that recognizes the C-terminal of PP1γ [16] (link); Myc-tag antibody (Cell Signaling), that recognizes Myc-fusion proteins; and HA-tag antibody (Clontech), that recognizes HA-fusion proteins. The secondary antibodies used were anti-mouse and anti-rabbit horseradish peroxidase-linked antibodies (GE Healthcare) for ECL detection.
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8

Protein Lysate Preparation and Western Blot Analysis

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Whole protein lysates from all tissues were prepared as previously described.41 (link) Whole protein lysates from cell lines were prepared by using RIPA lysis buffer (Santa Cruz Biotechnology Inc., Dallas, Texas, USA) according to the manufacturer’s instructions. Nuclear proteins were purified using a nuclear extraction kit (EMD Millipore, Billerica, MA, USA). SDS-polyacrylamide gel electrophoresis and western blot analyses were performed as previously described.33 (link) Antibodies for nuclear factor of activated T cells c1 (1:1 000) and lamin B1 (1:1 000) were from Santa Cruz Biotechnology. Antibody to detect irisin (epitope 42–112, 1:500) and FNDC5 expression was purchased from Phoenix Pharmaceuticals Inc. (#067-17). Antibodies for β-catenin (1:10 000) were from Sigma and those from P-AKT-1 (1:1 000), calcineurin (1:1 000), P-JNK (1:1 000), and β-actin (1:1 000) were from Cell Signaling (Danvers, MA, USA). The secondary antibodies were horseradish peroxidase-linked goat-anti-rabbit IgG (Santa Cruz Biotechnology). Blots were visualized using Pierce ECL chemiluminescence kit (Thermo Fisher Scientific).
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9

Antibody Panel for Chromatin Dynamics Analysis

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Lamin B1 (sc -56,144; IF 1:250) and Lap2 (sc -28,541; IF 1:500; WB 1:1000) antibodies were purchased from Santa Cruz Biotechnology; Lamin A (L1293; IF 1:1000; WB 1:1000) antibody was purchased from Sigma-Aldrich; LBR (12398–1-AP; IF 1:100; WB 1:1000) antibody was purchased from Thermo Fisher Scientific; HP1α (#2616; IF 1:200; WB 1:1000), H3K27me3 (#9733; IF 1:1600), and β-actin (#3700; WB 1:1000) antibodies were purchased from Cell Signaling Technology; H3K9me3 (ab8898; IF 1:500; WB 1:1000; Cut&Run 1:100) antibody was purchased from Abcam; H3K9me2 (#39041; IF 1:500; WB 1:2000) antibody was purchased from Active Motif; GAPDH (MAB5718; WB 1:5000) antibody was purchased from R&D Systems.
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10

Murine SUN1 and RTL1 Antibody Validation

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Murine sequence specific SUN1 and RTL1 antibodies were raised in rabbits and affinity purified by YenZym Antibodies, CA. The immunogen was the RDRTLKPPHLGHC peptide for mouse SUN1Δ7 and His tagged fusion protein for mouse RTL1 aa89-315. Specificity of RTL1 antibodies were confirmed by Western blot with WT and Rtl1 Δ fetus and placental extracts (Ito et al., 2015 (link)). The SUN1 Δ seven antibody showed no cross-reactivity with other SUN1 isoforms (Calvi et al., 2015 (link)). SUN1 antibodies raised against the Sun domain was provided by Dr Ya-Hui Chi (National Health Research Institutes, Taiwan), SUN1 monoclonal antibodies (12.10F) was raised against exon six sequences. GFP monoclonal antibodies was provided by Dr Brian Burke (A*STAR, Singapore). Antibodies to Drosha (Abcam ab12286); Lamin B1 (Santa Cruz Biotechnology); Lamin AC and MYC-tag (Cell signalling technology); M2 FLAG and laminin2 (ENZO); Alexa Fluor-conjugated (Invitrogen) and HRP-conjugated (Dako) secondary antibodies.
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