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18 protocols using hiscript q select rt supermix

1

Quantification of CTRP1 Gene Expression

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Total RNA was isolated from whole blood, cortex, and primary neurons using a Trizol reagent (Vazyme Biotech, Jiangsu, China). Then, mRNA was subjected to reverse transcription using HiScript Q Select RT SuperMix (Vazyme). The reaction product was subjected to quantitative RT-PCR analysis via stepwise amplification performed based on the primer sequence templates. The primer sequences of β-actin for rats were as follows: forward, 5′-TGTCACCAACTGGGACGATA-3′; reverse, 5′-GGGGTGTTGAAGGTCTCAAA-3′. The CTRP1 primers for rats were as follows: forward, 5′-CTGAGCCTTGTGC CACGAGTTC-3′; reverse: 5′-TCACGCAGGCTA GGGCTA TACC-3′.
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2

Quantitative RT-PCR Protocol for Gene Expression

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Total RNAs from tissues and cells were extracted with TRIeasyTM Total RNA Extraction Reagent TRIeasyTM (YEASEN, Shanghai, China) following the manufacturer's recommendation. Then, cDNA was reversely synthesized using HiScript® Q Select RT SuperMix for quantitative real‐time PCR (qPCR; Vazyme, Nanjing, China) according to the standard procedure. Quantitative RT‐PCR was performed on the StepOne Plus PCR system with AceQ® Universal SYBR® qPCR Master Mix (Vazyme). Glyceraldehyde‐3 phosphate dehydrogenase served as an internal reference. The relative expression levels of transcripts were calculated using the 2−△△ct method.
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3

Confirming Mutant Strain Δ_gidA_ via RT-PCR

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To confirm the mutant strain ΔgidA, we performed RT-PCR according to our previously reported methods (Tan et al., 2015 (link)). Briefly, RNA was isolated using SV Total RNA Isolation System (Promega, USA) according to the manufacturer's instructions. In addition, cDNA was synthesized using HiScript Q Select RT SuperMix (Vazyme, China) according to the manufacturer's instructions.
To confirm whether the upstream and downstream genes of gidA are unaffected and functioning normally, we designed the primers of SSU05_2162, gidA, and SSU05_2164 for RT-PCR (Table 2) from the cDNA.
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4

Quantifying Cerebral Cortex mRNA Expression

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Total RNA was isolated from mouse cerebral cortices cerebral cortex by Trizol reagent (Vazyme, Nanjing, China) according to the manufacturer’s protocol. Reverse transcription of mRNA was performed using HiScript Q Select RT SuperMix (Vazyme, Nanjing, China). To detect the amount of COX2 mRNA and DP1 mRNA and DP2 mRNA. The SYBR Green II (Biomake, Houston, TX, USA) incorporation method was applied with ATGB being an internal control for mRNA. The primer sequences are reported in Table 1.
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5

Quantitative Gene Expression Analysis

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The EPC cells were divided into three groups: controlDMSO, TET, and DHA. All samples were harvested 24 and 48 h after incubation, then extracted using TriQuick Reagent (Solarbio, China). The cDNA was synthesized using HiScript Q Select RT SuperMix (Vazyme, China) and qPCR was performed on an ABI QuantStudio 3 Real-Time PCR System (Applied Biosystems, USA) using AugeGreeen qPCR Master Mix (US Everbright Inc., China). The primers used for qPCR analysis are listed in Supplementary Table S1. The relative expression levels of genes were analyzed using the 2−△△CT method, with β-actin as the reference.
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6

Quantitative Analysis of MCM10 Expression

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Fresh tissue samples were immediately frozen in liquid nitrogen after surgical resection. Total RNA from tissues and cells was extracted using TRIzol reagent (Thermo Fisher Scientific, Waltham, MA, USA). cDNA was synthesized using the HiScript Q Select RT SuperMix for quantitative PCR and random hexamers from Vazyme Biotech (Nanjing, China). Quantitative real-time PCR was carried out with the SYBR Green PCR Master Mix (Vazyme Biotech). PCR primers are as follows: MCM10 forward, 5′-CACAGAAATGAACAAGAA-3′ and MCM10 reverse, 5′-AATAAGAACAAGGACACA-3′; GAPDH forward, 5′-GGAGCGAGATCCCTCCAAAAT-3′ and GAPDH reverse, 5′-GGCTGTTGTCATACTTCTCATGG-3′. GAPDH was used as a loading control. The relative expression of MCM10 was calculated using the 2−ΔΔCt method.13 (link)
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7

Plasma miR-100 Expression Analysis in ALL

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We extracted RNA from 200 μL plasma of 88 ALL cases and 99 cancer‐free controls using QIAGEN miRNeasy Mini Kit (Qiagen, Valencia, CA). The RNA was dissolved by 30 μL sterile water. We used 6 μL RNA to synthesize double‐stranded cDNA by Vazyme HIScript Q Select RT SuperMix (Vazyme, Nanjing, China) for RNA reverse transcription in a 15 μL reaction volume. qRT‐PCR was performed using AceQ qPCR SYBR Green Master Mix (Low ROX Premixed) (Vazyme) by QuantStudio 3. The primer was provided by Bulge‐Loop™ miRNA qRT‐PCR Primer (one RT primer and a pair of q‐PCR primers specific for miR‐100, RIBOBIO, Guangzhou, China). We used Micro‐16‐5p to normalize the data set. The relative expression was calculated by the 2‐ΔΔCt method.
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8

RT-PCR Confirmation of Mutant Strains

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To confirm the mutant strain Δstk and the complementary strain CΔstk, we also performed RT-PCR (Tan et al., 2015 (link)). Briefly, RNA was isolated using SV Total RNA Isolation System (Promega, USA) according to the manufacturer's instructions. Then, cDNA was synthesized using HiScript Q Select RT SuperMix (Vazyme, China) according to the manufacturer's instructions.
To confirm whether the upstream and downstream genes of stk in the mutant were affected or not, the genes were amplified using the primers SSU05_0427-F/SSU05_0427-R (for upstream gene) and SSU05_0429-F/SSU05_0429-R (for downstream gene; Table S1) using the SC-19 cDNA as template.
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9

qRT-PCR Analysis of CPXM2 Expression

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Total RNA was isolated from cell cultures or from snap-frozen tissues from GC patients using RNAiso Plus (Takara Bio, Kusatsu, Japan) according to the manufacturer's instructions, reverse transcribed with HiScript Q Select RT SuperMix (R132-01; Vazyme, Jiangsu, China) according to the manufacturer's protocol, and subjected to real-time reverse transcription (RT)-PCR using the 2−ΔΔCq method (21 (link)). The thermocycling conditions were as follows: 95°C for 30 sec, followed by 40 cycles of 95°C for 10 sec, 60°C for 32 sec, 95°C for 15 sec, 60°C for 60 sec and 95°C for 15 sec. Each sample was determined in duplicate. All PCR products were confirmed by 2.0% agarose gel electrophoresis. The sequences for RT-PCR primers were: CPXM2 forward primer, 5′-GTGCGCGGGAAGAAATGAC-3′ and reverse primer, 5′-CCTCCCTTGAGTGATGACACC-3′. The specificity of primers was validated by sequencing. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (forward primer, 5′-GTCAAGGCTGAGAACGGGAA-3′ and reverse primer 5′-AAATGAGCCCCAGCCTTCTC-3′) served as an internal control. Experiments were repeated three times in duplicate.
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10

Quantifying CPXM2 Expression in Osteosarcoma

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Total RNA was isolated from cell cultures or from snap-frozen tissues from osteosarcoma patients using RNAiso Plus (Takara Bio, Kusatsu, Japan) according to the manufacturer’s instructions, reverse transcribed with HiScript Q Select RT SuperMix (R132–01, Vazyme, Jiangsu, China) according to the manufacturer’s protocol, and subjected to real-time reverse transcription (RT)-PCR using the 2-ΔΔCT method [18 (link)]. The thermocycling conditions were as follows: 95 °C for 30 s, followed by 40 cycles of 95 °C for 10 s, 60 °C for 32 s, 95 °C for 15 s, 60 °C for 60 s and 95 °C for 15 s. Each sample was determined in duplicate. All PCR products were confirmed by 2.0% agarose gel electrophoresis. The sequences for RT-PCR primers were: CPXM2 forward primer, 5′-GTGCGCGGGAAGAAATGAC-3′; and reverse primer, 5′-CCTCCCTTGAGTGATGACACC-3′. The specificity of primers was validated by sequencing. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) served as an internal control. Experiments were repeated three times in duplicate.
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