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10 protocols using simplicity uv apparatus

1

Gellan Gum-Based Hydrogel Synthesis

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Gellan gum (Mw = 1 × 106 g/mol), ammonium persulfate, N,N,N′,N′-tetramethylethylenediamine, acetone, ethanol, sodium chloroacetate, hydrochloric acid, potassium chloride, monobasic and dibasic sodium phosphate and cefotaxime sodium salt were supplied from Sigma-Aldrich, Germany and were used as received. N-vinylimidazole was purchased from Sigma Aldrich, Germany and was distilled under vacuum. Ultrapure grade water (Ω < 10−6 s/cm) was prepared by purifying deionized water with Millipore Simplicity-UV apparatus.
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2

Quantitative Analysis of Food Volatiles

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All chemicals used had a purity grade higher than 95%. Hexanal, benzaldehyde, 2-methylpropanal, nonanal, 2-methylbutanal, 3-methylbutanal, and 4-fluorobenzaldehyde standards were purchased from Sigma-Aldrich (Steinheim, Germany). Acetaldehyde, phenylAcetaldehyde, 5-(hydroxymethyl) furfural, 2-furaldehyde, and trans-2-nonenal were purchased from Acros Organics (Geel, Belgium). Absolute ethanol, acetonitrile, and methanol (HPLC grade 99.99%) was obtained from Sigma-Aldrich (Steinheim, Germany). Sodium chloride was obtained from Panreac (Barcelona, Spain). Ultra-pure water with a resistivity of >18 MΩ.cm (type 1) was obtained from a Millipore Simplicity® UV apparatus (Milford, MA, USA). The alkane solution (C7–C30) was obtained from Supelco (Sigma Aldrich, St. Louis, MO, USA).
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3

Volatile Compound Analysis by GC-MS

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All chemicals used had a purity grade higher than 95%. Hexanal, benzaldehyde, 2-methylpropanal, nonanal, 2-methylbutanal, 3-methylbutanal, and 4-fluorobenzaldehyde standards were purchased from Sigma-Aldrich (Steinheim, Germany). Acetaldehyde, phenylAcetaldehyde, 5-(hydroxymethyl) furfural, 2-furaldehyde and trans-2-nonenal were purchased from Acros Organics (Geel, Belgium). Absolute ethanol, acetonitrile, and methanol (all HPLC grade 99.99%) came from Sigma-Aldrich (Steinheim, Germany). Sodium chloride was obtained from Panreac (Barcelona, Spain). Ultra-pure water with a resistivity of >18 MΩ·cm (type 1) was obtained from a Millipore Simplicity® UV apparatus (Milford, MA, USA). The alkane solution (C7–C30) was obtained from Supelco (Sigma Aldrich, St. Louis, MO, USA).
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4

Sotolon Quantification in Fortified Wines

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All chemicals and standards had a purity grade higher than 97%. Sotolon was purchased from SAFC (St. Louis, MO, USA). Absolute ethanol was from Sigma-Aldrich (Steinheim, Germany); formic acid, tartaric acid, and UPLC grade methanol were from Panreac (Barcelona, Spain). Ethyl acetate was from Fisher Scientific (Leicestershire, UK). The type 1 ultrapure water was obtained with a Simplicity® UV apparatus from Millipore (Milford, MA, USA).
A synthetic fortified wine was prepared and consisted in a solution containing 6 g/L of tartaric acid in a 180 mL/L ethanol/water solution, pH adjusted to 3.5 with a 1 M sodium hydroxide (Panreac) solution. Standard stock (400 mg/L) and working (200 mg/L) solutions of sotolon were rigorously prepared in ethanol and water, respectively. Seven calibration points were prepared in synthetic wine and in a fortified wine, within the validation range 1–2000 μg/L.
All eluents were filtered through a hydrophilic polypropylene 0.2 μm pore size membrane filter (Pall Corporation, Ann Arbor), before being used. Wine extracts were filtered using Chromafil PTFE 0.2 µm syringe filters (Macherey-Nagel, Düren, Germany), before being analysed.
A sample set of 44 fortified wines with different ages (3–115 years old), sweetness degrees (including dry (5), medium-dry (6), medium-sweet (10), and sweet wines (23)), and ethanol contents (18 to 20%) were analysed.
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5

Ammonium Acetate Buffer Preparation

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Ammonium acetate (NH4OAc, ≥99.99%), ammonium hydroxide (ACS reagent), and acetic acid (ACS reagent) were purchased from Sigma-Aldrich (Steinheim, Germany). The electrolyte solution was prepared by dissolving 40 mM of Ammonium acetate with water of ultrahigh quality (UHQ) delivered by a Simplicity UV apparatus (18.2 MΩ × cm at 25 °C, Millipore, Billerica, MA, USA). The solution was adjusted to different pH levels ranging from 4.0 to 9.0 (with 1.0 step increase) with ammonium hydroxide or acetic acid. Lastly, the solution was filtered through a surfactant-free cellulose acetate membrane with 0.20 µm pore size syringe filters (Sartorius, Göttingen, Germany).
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6

Mouse IgG Antibody Immunodetection Protocol

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Antimouse IgG (whole molecule) - alkaline phosphatase antibody (goat) and Tween 20 were obtained from Sigma-Aldrich (St. Louis, MO, U.S.A.). The mouse-derived antivirus antibody and the human serum albumin (HSA)-containing PBS buffer without TBE virions were kindly provided by Baxalta Innovations (Orth/Donau, Austria; previously Baxter Innovations). The sucrose concentration was determined with an analytical UV-test for sucrose/d-glucose purchased from R-Biopharm (Darmstadt, Germany).27 All buffers and solutions were prepared with water of ultrahigh quality with a specific resistivity of 18.2 MΩ × cm at 25 °C delivered by a Simplicity UV apparatus (Millipore, Billerica, MA, U.S.A.). A detailed description of all other chemicals is provided in the supplement.
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7

DNA Conformation and Interactions

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T4 G7 DNA (ca. 166 kbp, ca. 60 μm contour
length) was purchased from Nippon Gene Co. Ltd. (Japan). Salmon sperm
DNA (ca. 300 bp) was purchased from Wako Pure Chemical Industries,
Ltd. (Japan). The concentration of DNA is given in phosphate groups.
Fluorescent dye YOYO-1 (1,1′-(4,4,7,7-tetramethyl-4,7-diazaundeca-methylene)-bis-4-[3-methyl-2,3-dihydro-(benzo-1,3-oxazole)-2-methylidene]-quinolinium
tetraiodide) was provided by Molecular Probes (Invitrogen, Japan).
NaCl, CaCl2·2H2O, and Na2CO3 were purchased from Wako Pure Chemical Industries, Ltd. (Japan).
Spermine tetrachloride, disodium dihydrogen ethylendiaminetetraacetate
dihydrate (EDTA), and ethanol were purchased from Nacalai Tesque Inc.
(Japan). Sodium polystyrene sulfonate (PSSNa, Mw ∼15 000) and poly(diallyldimethylammonium chloride)
(PAH, Mw ∼75 000) were purchased
from Aldrich. Milli-Q water purified by Simplicity UV apparatus (Millipore,
Japan) was used in all experiments.
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8

Purification and Characterization of Bovine Proteins

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Ammonium acetate (≥99.99%) and ammonium hydroxide (28.2% ammonia in water) were purchased from Sigma–Aldrich (St. Louis, MO, USA), sodium chloride (≥99.5%) as well as sodium hydroxide (≥99%) were obtained from Merck (Darmstadt, Germany). Ultra-high quality water was delivered from a Simplicity UV apparatus (Millipore, Molsheim, France) with 18.2 MΩ cm resistivity at 25 °C. Albumin (bovine, ≥96%, BSA, MW of 66 kDa according to manufacturing company, pI = 5.4 [41] (link)) and γ globulin (bovine, ≥99%, IgG, MW 150 kDa according to manufacturing company, pI = 6.6 [41] (link)) were purchased from Sigma–Aldrich as was dimethyl sulfoxide (DMSO, ≥99.9%). Benzoic acid (≥99.9%) was obtained from Fluka (Buchs, Switzerland).
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9

Ammonium Acetate Solution Preparation

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ammonium acetate (NH4OAc, ≥99.99%) and ammonium hydroxide (ACS reagent) were both purchased from Sigma‐Aldrich (Steinheim, Germany). The nES GEMMA electrolyte solution was prepared by dissolving 40mM of ammonium acetate with water of ultra‐high quality (UHQ) delivered by a Simplicity UV apparatus (18.2 MΩ × cm at 25°C, Millipore, Billerica, MA, USA). The solution was adjusted to pH 7.0 with ammonium hydroxide and filtered through a surfactant‐free cellulose acetate membrane with 0.20‐μm pore size syringe filters (Sartorius, Göttingen, Germany).
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10

GEMMA Electrolyte Solution Preparation

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Ammonium
acetate (NH4OAc, ≥99.99%) and ammonium hydroxide
(ACS reagent) were both purchased from Sigma-Aldrich (Steinheim, Germany).
The GEMMA electrolyte solution was prepared by dissolving 40 mM ammonium
acetate with water of ultrahigh quality (UHQ) delivered by a Simplicity
UV apparatus (18.2 MΩ × cm at 25 °C, Millipore, Billerica,
MA, USA). The solution was adjusted to pH 7.0 with ammonium hydroxide
and filtered through a surfactant-free cellulose acetate membrane
with 0.20 μm pore size syringe filters (Sartorius, Göttingen,
Germany).
AF4 carrier buffer (PBS) was prepared by dissolving
sodium chloride (≥99.5%), monopotassium phosphate (≥99.0%),
potassium chloride (≥99.5%, all from Sigma-Aldrich), and disodium
phosphate (≥99.5%, Merck, Darmstadt, Germany) in UHQ water.
The elution buffer additionally included 0.02% (w/v) sodium azide
(Merck) as an antimicrobial agent. The pH was adjusted to 7.4 with
ammonium hydroxide and filtered through a 0.1 μm pore size polyethersulfone
membrane filter (VacuCap, Pall, NY, USA).
Sample preparation
for AFM measurements required UHQ water and
nitrogen gas (≥99.999%, Messer Austria GmbH, Gumpoldskirchen
Austria) for rinsing and drying.
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