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112 protocols using ab15148

1

Immunofluorescence Staining of EMT Markers

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SW620 cells and LoVo cells were fixed with 4% paraformaldehyde for 15 min and then permeabilized with saponin (Sigma-Aldrich, St. Louis, USA) for 5 min. Next, the cells were blocked with 5% BSA for 30 min, and then incubated for 1 h at room temperature with primary antibodies against E-cadherin (Abcam, ab15148, 1: 500), snail (Abcam, ab216347, 1: 200), vimentin (Abcam, ab92547, 1: 1000), and N-cadherin (Abcam, ab18203, 1: 500). Next, the cells were washed 3 times with PBST for (5 min per wash); after which, a fluorescent secondary antibody (CST, 2985 or 2975, 1:1000) was added, and the cells were incubated at room temperature for 1 h in the dark. After being rinsed 3 times with PBST, followed by ultimate rinse with distilled water, the cells were sealed for examination by fluorescence microscopy.
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2

Quantitative Analysis of Protein Expression

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Western blot was performed according to a previously described method18 (link). GAPDH was used as an internal loading control. Densitometric analysis was performed on western blot images using Image Pro-Plus 6.0 software (Media Cybernetics). The catalog numbers and dilution of the antibodies used (Abcam, Cambridge, MA, USA) are as follows: matrix metalloproteinase (MMP)-2, ab37150, 1:500; MMP-9, ab38898, 1:1000; E-cadherin, ab15148, 1:500; vimentin, ab92547, 1:2500; PDK1, 1:800, ab110025; p-AKT1 (phospho S473), 1:2500, ab194201; p-mTOR (phospho S2448), 1:1000, ab109268; AKT1, 1:1000, ab227100; mTOR, ab2732, 1:2000; and GAPDH, ab9485, 1:2500. Western blot assays were replicated three times.
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3

Quantification of Drug-resistance Proteins

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Total proteins were extracted from HepG2 cells and Huh7 cells using radio-immunoprecipitation assay lysis buffer (Beyotime Biotechnology, Shanghai, China). After protein quantitation using the bicinchoninic acid assay, the proteins were separated by PAGE with a 5% stacking gel and a 10% separating gel and then transferred onto a nitrocellulose membrane using wet transfer apparatus. Next, the membrane was blocked with 5% BSA for 1 h and incubated with the diluted rabbit anti-human antibodies from Abcam (Cambridge, UK) at 4°C overnight: MDR-1 (ab129450, 1:1,000), MRP2 (ab203397, 1:500), MRP3 (ab107083, 1:250), GAPDH (ab37168, 1 μg/mL), and E-cadherin (ab15148, 1:500). Next, the membrane was washed using PBS/Tween-20 and further incubated by applying 5% skimmed milk-diluted secondary antibody goat anti-rabbit IgG (ab205718, 1: 5000) for 1 h in avoidance of light. Subsequently, the protein bands were developed and visualized in a gel imaging system (MG8600, Bio-Rad, Hercules, CA, USA). Images were analyzed using the Image-Pro Plus software (Version 7.0, Media Cybernetics, Silver Springs, MD, USA). The expression levels of target proteins relative to GAPDH were calculated.
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4

Protein Expression Analysis by Western Blot

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The protein concentration of samples was detected by the BCA kit (Auragene, Changsha, P.R. China). Proteins were separated by SDS-PAGE and transferred onto polyvinylidene fluoride (PVDF) membranes (Invitrogen). PVDF membranes were blocked with 5% dry milk-TBST for 30 min at 37°C. The blots were then incubated with an antibody [anti-Btbd7 antibody (sc-241937; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-E-cadherin antibody (ab15148; Abcam, Cambridge, MA, USA), anti-N-cadherin antibody (ab12221; Abcam), anti-vimentin antibody (ab8978; Abcam), anti-CD45 antibody (ab10558; Abcam), anti-CD44 antibody (ab157107; Abcam), CD133 polyclonal antibody (18470-1-AP; Proteintech, Chicago, IL, USA), OCT4 polyclonal antibody (11263-1-AP; Proteintech), SOX2 polyclonal antibody (11064-1-AP; Proteintech), anti-ALDH1A1 antibody (ab52492; Abcam), and anti-Nanog antibody (ab109250, Abcam)] overnight at 4°C. Following three washes, the membranes were then incubated with a secondary antibody for 40 min at 37°C in TBST. Signals were visualized by ECL chemiluminescence detection kit (Auragene).
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5

Western Blot Analysis of Protein Markers

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Protein samples were prepared in RIPA lysis buffer (Abcam, ab156034 with protease inhibitor cocktail). The protein concentration of the samples was tested with a BCA protein assay kit (Abcam, ab102536). Aliquots of 20 μg protein was fractionated with 10% SDS-PAGE gel and transferred to nitrocellulose membranes. The membranes were blocked in 5% skimmed milk, dissolved in PBST (0.5% Tween-20) buffer for 2 h at room temperature, and incubated with the following primary antibodies: rabbit anti-TSG101 (Abcam, ab125011, 1/1000), mouse anti-HSP70 (Abcam, ab181606, 1/1000), rabbit anti-E-cadherin(ab15148) (1/500), or rabbit anti-Vimentin (ab92547) (1/1000) at 4°C overnight. Secondary antibodies (1/1000) were subsequently incubated with the membranes at room temperature for 1 h. Positive staining was visualized on X-ray films with Pierce enhanced chemiluminescent visualization reagents.
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6

Western Blot Analysis of EMT Markers

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Transfected SK-BR-3 and BT-549 cells were lysed using radioimmunoprecipitation assay buffer (Beyotime Institute of Biotechnology). Proteins (50 µg per lane) were separated via SDS-PAGE on a 10% gel then transferred onto polyvinylidene difluoride membranes (Thermo Fisher Scientific, Inc.). The membranes were blocked with 5% dry milk in Tris-buffered saline (TBS) with 0.2% of Tween-20 at 4°C overnight. The membranes were subsequently incubated with primary antibodies against E-cadherin (1:500; ab15148; Abcam), N-cadherin (1:500; ab18203; Abcam), Vimentin (1:500; ab8978; Abcam), and GAPDH (1:250; ab9485; Abcam) at room temperature for 3 h. Membranes were then incubated with horseradish peroxidase-conjugated secondary antibody (1:5,000; ab6721; Abcam) at room temperature for 1 h. The protein signals were detected using an Enhanced Chemiluminescence Western Blotting Substrate kit (Thermo Fisher Scientific, Inc.) and quantified using ImageJ software v1.46 (National Institutes of Health). GAPDH was used as an internal control.
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7

Protein Extraction and Immunoblotting Analysis

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Proteins were extracted using RNA immunoprecipitation (RIP) assay lysis buffer (Beyotime, Beijing, China) and quantified by bicinchoninic acid (BAC) method, then separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and shifted onto a polyvinylidene fluoride (PVDF) membrane. Immunoblotting used antibodies against CD9 (1: 5000, ab68418, Abcam, Cambridge, MA, USA), CD63 (1: 2000, ab68418, Abcam), E-cadherin (E-cad; 1: 1000, ab15148, Abcam), vimentin (1: 5000, ab92547, Abcam), ERα (1: 3000, ab13504, Abcam), GAPDH (1: 10 000, ab181602, Abcam) and the secondary horseradish peroxidase (HRP)-conjugated antibody (1: 1000, ab9482, Abcam). The protein bands were visualized using electrochemiluminescence (ECL).
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8

Western Blot for Protein Expression

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At 48 h post-transfection, OS tissues and cells were collected and lysed in radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime, Shanghai, China) containing phenylmethanesulfonyl fluoride (PMSF; Beyotime) to obtain total protein. The protein concentrations of the total cellular lysates were quantified using a bicinchoninic acid (BCA) protein assay kit (Beyotime). An equal amount (40 µg) of protein was resolved by 810% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). After that, the proteins were transferred to polyvinylidene fluoride (PVDF) membranes (0.2 μm, Beyotime). Next, all membranes were blocked using the 5% non-fat milk and then probed with the following primary antibodies: antibodies against hexokinase II (HK2) (1:5000, ab227198, 102 kDa), E-cadherin (1:500, ab15148, Abcam), Vimentin (1:2500, ab92547, Abcam), β-actin (1:2500, ab8227, Abcam), MAPK7 (1:200, ab92547, Abcam) and GAPDH (1:2000, ab37168, Abcam). Subsequently, all membranes were maintained in HRP-conjugated anti-rabbit/mouse IgG (Sangon Biotech). Finally, all protein bands were observed using the enhanced chemiluminescence (ECL) system (GEHeathcare, Waukesha, WI, USA). The protein abundances were normalized with GAPDH and β-actin, and ImageJ software was applied to evaluate the density.
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9

Western Blot Analysis of Epithelial-Mesenchymal Transition

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Proteins were collected from cultured cells in Radio Immuno Precipitation Assay (RIPA) lysis buffer (Beyotime, Shanghai, China). The concentrations of proteins were detected via BCA protein kit (Beyotime). Aliquots of protein were separated by 12% SDS-PAGE and resolved proteins were transferred to polyvinylidene fluoride (PVDF) membranes (EMD Millipore, Billerica, MA, USA). Membranes were blocked with 5% milk in PBS with 0.1% Triton X-100 and incubated with different primary antibodies: anti-RACK1 antibody (ab62735, 1:1,000, 30 kDa, Abcam, Cambridge, MA, USA), anti-E-cadherin antibody (ab15148, 1:500, 135 kDa, Abcam, USA), anti-N-cadherin antibody (ab18203, 1:1,000, 125 kDa, Abcam), anti-Snail antibody (ab82846, 1:500, 68 kDa, Abcam), anti-phosphorylation (p)-β-catenin antibody (ab27798, 1:500, 86 kDa, Abcam), anti-β-catenin antibody (ab32572, 1:5,000, 92 kDa, Abcam), anti-c-Jun antibody (ab32137, 1:1,000, 43 kDa, Abcam) and anti-GAPDH (ab181602, 1:10,000, 36 kDa, Abcam, USA) overnight at 4°C. The membranes were then incubated with the appropriate horseradish peroxidase (HRP)-conjugated secondary antibody (Proteintech, Rosemont, IL, USA). Protein bands were detected with enhanced chemiluminescence (ECL, Thermo Fisher Scientific) and visualized by Quantity one (Bio-Rad Laboratories Inc., Hercules, CA, USA).
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10

Regulation of MRTFA-CTNNB1 Signaling

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The p3Xflag‐MKL1‐N200 expression vector was kindly provided by Professor R. Prywes (Colombia University, New York, NY, USA). It encodes a constitutively nuclear and active form of MRTFA (MRTFA‐CA). pcDNA3‐S33Y CTNNB1 (#19286), M50 Super 8x TOPFlash (TCF4‐Luc #12456) and HRE‐luciferase (#26731) were purchased from Addgene. Human MRTFA (ON‐TARGETplus® SMARTpool®) and esiRNA human HIF1A were purchased from Thermo Scientific and Sigma respectively. Antibodies against the following proteins were used: CTNNB1 (ab6302 Abcam), CDH1 (ab15148 Abcam), ERK (extracellular signal‐regulated kinase 1); K‐23 ESR1 (HC‐20, SC‐543, Santa Cruz Biotechnology), FHL2 (ab12327; Abcam), HIF1A (610958 BD Biosciences), MRTFA (ab113264 Abcam) and phalloidin‐iFluor 594 (lab176757; Abcam).
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