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Lipidex 5000

Manufactured by PerkinElmer
Sourced in United States

Lipidex-5000 is a gel filtration chromatography media used for the separation and purification of lipids and lipoproteins from various biological samples. It is composed of a hydrophilic polymer matrix and is designed to provide efficient separation based on the size and molecular weight of the target molecules.

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3 protocols using lipidex 5000

1

Purification of Recombinant Surfactant Protein

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The crude extract in the methanol:dichloroethane:H2O 85:10:5 (by vol) phase was dried under reduced pressure at 37°C and then resuspended in a 8–10 ml, corresponding to 20–25% of the column volume, of the same solvent mixture. If the solution was not clear the sample was centrifuged at 200 x g for 5 min to remove non-dissolved NaCl and the supernatant was loaded on a 2.5 cm x 8 cm Lipidex-5000 (PerkinElmer, Waltham, MA, USA) column equilibrated in methanol:dichloroethane:H2O 85:10:5 (by vol). Fractions were collected, dried under reduced pressure at 37°C, and weighed. The first fraction corresponding to 0.7–1 column volume, containing rSP-C33Leu as well as polar lipids, was dried, redissolved in about 4 ml of methanol:dichloroethane:H2O 85:10:5 (by vol), corresponding to 1% of the column volume and centrifuged at 70 x g for 5 min to further remove NaCl. The supernatant was loaded on a 2.5 cm x 80 cm Lipidex-5000 column in methanol:dichloroethane:H2O 85:10:5 (by vol). One fraction of 100 ml followed by fractions of 10 ml were collected, dried under reduced pressure and weighed. An aliquot of each fraction was analyzed by SDS-PAGE as described above. Fractions that contained rSP-C33Leu were dried and stored at -20°C.
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2

Purification and Analysis of Retinoids

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Kanamycin, sodium chloride, potassium chloride, Tris, Hepes, potassium phosphate, glycerol, benzonase, lysozyme, thrombin, protease inhibitor tablets, Coomasssie Brilliant Blue and atRA were purchased from Millipore-Sigma (St. Louis, MO, USA). The 4-oxo-atRA-d3 was purchased from Santa Cruz Biotechnology (Dallas, TX, USA) and 4-OH-atRA was purchased from Toronto Research Chemicals (North York, ON, Canada). Sodium hydroxide, PMSF, imidazole, Pierce BCA protein assay, DTT, EDTA, IPTG, tryptone, yeast extract, high-performance liquid chromatography (HPLC) and mass spectrometry grade acetonitrile, water, and ethyl acetate were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Lipidex-5000 was purchased from Perkin Elmer Inc (Waltham, MA, USA). Mini-PROTEAN TGX protein gels were purchased from Bio-Rad (Hercules, CA, USA). NBD-stearate was purchased from Avanti Polar Lipids (Birmingham, AL, USA). Pooled human liver microsomes were purchased from Gibco (Thermo Fisher Scientific, Waltham, MA, USA). Recombinant CYP3A4 and CYP2C8 Supersomes co-expressed with cytochrome P450 reductase and cytochrome b5 were purchased from Corning (Glendale, AZ, USA). Recombinant CYP26A1 was expressed in Sf9 insect cells, as previously described [17 (link),20 (link)]. Rat P450 reductase was expressed in E. coli and purified, as previously described [33 (link)].
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3

Purification and Characterization of Recombinant FABP1

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Hexa-histidine tagged human FABP1 was expressed in Rosetta 2 E. coli (Novagen, Madison, WI) and FABP1 purification and delipidation were optimized and conducted as described in detail in Supplemental Materials. In brief, the his-tagged FABP1 was purified using HisTrap HP affinity column (GE Healthcare, Chicago, IL), the tag was cleaved by thrombin and the cleaved protein was purified and buffer exchanged by gel filtration into 10 mM potassium phosphate pH 7.4, 150 mM KCl. The FABP1 was delipidated using butanol and Lipidex-5000 (Perkin Elmer Inc., Waltham, MA, USA). FABP1 was stored on ice and the concentration was quantified via bicinchoninic acid (BCA) (Pierce, Waltham, MA) assay prior to adding 0.5 mM DTT. The purified protein was characterized using native mass spectrometry.
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