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10 protocols using vero e6 cells

1

Isolation of Viruses from Spleen and Bat Samples

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For virus isolation, 10% (w/v) homogenates prepared from 107 spleen samples collected in 2006 were inoculated onto Vero E6 cells in 48-well plates (Corning, Corning, NY, USA). The plates were incubated for 1 h at 37 °C with 5% CO2 to permit adsorption on the virus. The cells were cultivated using fresh Eagle’s minimum essential medium (MEM) (Nissui Pharmaceutical Co., Tokyo, Japan) supplemented with 2% fetal calf serum (FCS) at 37 °C with 5% CO2 for 2 weeks or until cytopathic effect (CPE) appeared. The tissue culture (TC) supernatant was blind-passaged three times for monitoring of CPE.
For virus isolation from eight PCR-positive bats, 10% (w/v) homogenates from the spleen, liver and kidney samples per individual animal were processed and inoculated onto Vero E6 and Madin-Darby canine kidney (MDCK) cells according to the above protocol.
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2

Pseudovirus Neutralization Assay for SARS-CoV-2

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Vero E6 cells (ATCCCat# CRL-1586) were seeded at 2x104 cells/well in a black-well, tissue culture treated, 96-well plate (Corning Cat# 3916) 24 h before the assay. Abs were diluted in MEM supplemented with 5% FBS and 1% Pen/Strep media to obtain an 8-point, 3-fold dilution curve with starting concentration at 20 μg/ml. Eight hundred Pfu of SARS2-nLuc and MERS-nLuc replication competent viruses were mixed with Abs at a 1:1 ratio and incubated at 37°C for 1 h. One-hundred microliters of virus and Ab mix was added to each well and incubated at 37°C + 5% CO2 for 20 to 22 h. Luciferase activities were measured by the Nano-Glo Luciferase Assay System (Promega Cat# N1130) following the manufacturer’s protocol using a GloMax luminometer (Promega). Percent inhibition and IC50 were calculated as pseudovirus neutralization assay described above. All experiments were performed as duplicates and independently repeated three times. All the live virus experiments were performed under biosafety level 3 (BSL-3) conditions at negative pressure, by operators in Tyvek suits wearing personal powered-air purifying respirators.
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3

SARS-CoV-2 Cell Culture and Epithelial Cells

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Chemicals and reagents were purchased from ThermoFisher unless indicated otherwise. Vero E6 cells (CRL-1586) were purchased from the American Type Culture Collection. SARS-CoV-2 viruses were grown in Vero E6 cells in complete minimal essential medium (MEM) with L-glutamine (Corning) containing certified 5% fetal bovine sera (FBS), 5 mM penicillin/streptomycin, and L-glutamine. Normal human tracheal epithelial cells (NHTE) donated from a 42-year-old Caucasian male were purchased through Cell Applications Cat# 504-05a, Lot# 2559. Normal human nasal epithelial cells (NHNE) cells collected from the nasal mucosa of a 48-year-old Caucasian male were purchased from PromoCell Cat# C12620, Lot# 464Z017.
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4

Quantifying Viral Loads in Infected Livers

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Parts of infected livers were weighed, homogenized using ceramic beads, and centrifuged for 10 min at 450 g at 4°C. Supernatant was serially diluted in Dulbecco’s modified Eagles Medium (DMEM, Lonza) supplemented with 10% FCS before inoculation onto overnight grown 90% confluent VeroE6 cells in 6 well plates (Corning). After 1 hour incubation, each 10^2 to 10^7 serial diluted inocula was removed and the cell layers were covered with a solution of 0.5% SeaKem®Agarose (Lonza) in Minimal essential Medium Eagle (EMEM, Lonza) supplemented with 10% FCS. The agarose layer was removed after 5 days incubation at 37°C, 5% CO2, and cells were stained with a crystal violet solution in 2% formaldehyde (Merck). The number of plaques at each dilution was counted and averaged to obtain the viral concentration of the sample in PFU/ml. Each sample was corrected for liver weight input and is expressed as PFU per gram liver.
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5

SFTSV Infection and Antibody Detection

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The IFAs were performed as previously reported [10 (link)]. Briefly, Vero E6 cells in 150 cm2 culture vessels (Corning, USA) were sensitized with 2 mL of 1 × 103 TCID50/mL SFTSV for 1 h at 37℃. The infected cells were detached with 0.25% trypsin-ethylenediaminetetraacetic acid (Gibco, USA) 6 days after infection. The floating cells were spotted onto reaction wells (Paul Marienfeld, Germany) and fixed with a methanol:acetone (1:1) solution. Serially diluted serum samples were incubated with fixed cells for 1 h at 37℃, and the fluorescence was detected using fluorescein isothiocyanate (FITC)-labeled secondary antibodies. The fluorescence was observed by using a Nikon TE-2000U fluorescence microscope (Nikon, Japan). The anti-bovine and anti-horse secondary antibodies (KPL) were diluted to 2.5 µg/mL prior to use.
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6

Hantavirus Antibody Detection in Vero E6 Cells

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Vero E6 cells were purchased from the American Type Culture Collection. Vero E6 cells were grown in complete minimal essential media (c-MEM) (Corning, NY, USA) which included 10% FBS (Gibco, Waltham, MA, USA), 5 mM penicillin/streptomycin (Gibco), and l-glutamine (Gibco). Cells were incubated at 37°C with 5% CO2. DOBV and PUUV were provided by Dr. Connie Schmaljohn (USAMRIID, Frederick, MD, USA). Cells were infected with 0.1 MOI of PUUV or DOBV and grown for 7 days. Virus-infected cells were harvested, aliquoted and grown overnight on 10 spot microscope slides (Fisher) and fixed in acetone as previously described (Jonsson et al., 2010a ). To identify sera with antibody to hantaviral antigens, we first screened a 1:10 dilution of sera in PBS. The presence of antigen-linked antibody was detected by a second incubation with Goat anti-Human IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 (Thermo Fisher). Samples were read for the presence of perinuclear specific staining using a fluorescent microscope. For sera that were positive for antibodies, we further assessed its reciprocal titer with two-fold dilutions of sera from 1:32 to 1:2048. Slides without virus were prepared and used as a negative control in the evaluation of the IFA slides along with a positive control sera from rodents. In addition, on each slide, well for a negative (no sera) control.
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7

SARS-CoV-2 Virus Neutralization Assay

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Vero E6 cells (USAMRIID) were plated at 20,000 cells per well in black-walled 96-well plates (Corning 3904). mAbs were serially diluted 3-fold with a maximum of eight dilution spots. Diluted antibodies were mixed with 85 PFU/well of recombinant SARS-CoV-2-nLuc virus, and the mixtures were incubated at 37 °C with 5% CO2 for 1 hour. Following incubation, growth media was removed, and virus-antibody mixtures were added to the cells in duplicate. Virus-only controls were included in each plate. Following infection, plates were incubated at 37 °C with 5% CO2 for 48 hours. After the 48-hour incubation, cells were lysed, and luciferase activity was measured via Nano-Glo Luciferase Assay System (Promega) according to the manufacturer specifications. Neutralization titers were defined as the sample dilution at which a 50% reduction in relatively light unit (RLU) was observed relative to the average of the virus control wells.
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8

SARS-CoV-2 Virus Production in Vero E6 Cells

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Vero E6 cells (ATCC CRL-1586) were plated in a T225 flask with complete DMEM (Corning 15-013-CV) containing 10% FBS, 1×PenStrep (Corning 20-002-CL), 2 mM l-Glutamine (Corning 25-005-CL) overnight at 37 °C 5% CO2. The media in the flask was removed and 2 mL of SARS-CoV-2 strain USA-WA1/2020 (BEI Resources NR-52281) in complete DMEM was added to the flask at an MOI of 0.5 and allowed to incubate for 30 min at 34 °C 5% CO2. After incubation, 30 mL of complete DMEM was added to the flask. The flask was then placed in a 34 °C incubator at 5% CO2 for 5 days. On day 5 post-infection the supernatant was harvested and centrifuged at 1000×g for 5 min. The supernatant was filtered through a 0.22 µm filter and stored at −80 °C.
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9

SARS-CoV-2 Infectious Clone and Fluorescent Reporter

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The infectious clone SARS-CoV-2 (icSARS-CoV-2) and mNG-tagged SARS-CoV-2 (icSARS-CoV-2-mNG) was kindly provided to us and previously described by Dr. Vineet Menachery (UTMB).(25 (link)) Briefly, the SARS-CoV-2 virus used was derived from infectious clone 2019-nCOV/USA_WA1/2020 and tagged with a fluorescent reporter gene (mNG) in ORF7.(25 (link)) Viral titers were determined by plaque assay on VeroE6 cells (ATCC). VeroE6 cells were cultured in complete DMEM medium consisting of 1x DMEM (Corning Cellgro), 10% FBS, 25 mM HEPES Buffer (Corning Cellgro), 2 mM L-glutamine, 1mM sodium pyruvate, 1x Non-essential Amino Acids, and 1x antibiotics. Viral stocks were titered on VeroE6 cells and stored at −80°C until use.
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10

SARS-CoV-2 and MVA Vaccine Characterization

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HEK (Human Embryonic Kidney)-293T cells, DF-1 (Chicken embryo fibroblasts), and Vero cells were obtained from ATCC. All MVA vaccines were produced in Amara’s laboratory at the Emory University. SARS-CoV-2 (icSARS-CoV-2) virus was obtained from BEI resources and grown in Suthar’s laboratory at the Emory University. mNeonGreen SARS-CoV-2 (2019-nCoV/USA_WA1/2020) virus was produced by Pei Yong Shi’s laboratory at the University of Texas. The infectious clone SARS-CoV-2 (icSARS-CoV-2) was propagated in VeroE6 cells (ATCC) and sequenced (Xie et al., 2020 (link)). The titer of MVA viruses was determined using DF-1 cells and SARS-CoV-2 viruses (icSARS-CoV-2 and 2019-nCoV/USA_WA1/2020) using VeroE6 cells. VeroE6 cells and DF-1 cells were cultured in complete DMEM medium consisting of 1x DMEM (Corning Cellgro), 10% Fetal bovine serum (FBS), 25 mM HEPES Buffer (Corning Cellgro), 2 mM L-glutamine, 1mM sodium pyruvate, 1x Non-essential Amino Acids, and 1x antibiotics. Viral stocks were stored at −80°C until further use.
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