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77 protocols using dmem high glucose

1

Differentiation of SH-SY5Y Neuroblastoma Cells

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The SH‐SY5Y human neuroblastoma cell line (ATCC® CRL‐2266TM) was purchased from the American Type Culture Collection. Cell culture and differentiation were performed as described previously (Tagai et al., 2020 (link)). In brief, SH‐SY5Y cells were cultured in Dulbecco's modified eagle medium (D‐MEM)/Ham's F‐12 (FUJIFILM Wako Pure Chemical Corporation, Cat#048‐29785) containing 10% fetal bovine serum (FBS), 100‐units/ml penicillin, and 100‐μg/ml streptomycin in a 37°C incubator in an atmosphere of 5% CO2 and 100% relative humidity. In the cell differentiation, SH‐SY5Y cells were inoculated at an initial density of 1.0 × 105 cells/dish in a collagen I‐coated φ 3.5 cm dishes. All‐trans‐RA (FUJIFILM Wako) was added 2 days after plating at a final concentration of 10 μM dissolved in high‐glucose D‐MEM (FUJIFILM Wako, Cat#043‐30085), which was supplemented with 15% FBS. After 5 days of culturing in the presence of RA, cells were washed with high‐glucose D‐MEM and incubated for 2 days with 100 ng/ml human recombinant BDNF (FUJIFILM Wako) in high‐glucose D‐MEM without L‐glutamine and phenol red (FUJIFILM Wako, Cat#040‐30095) containing 4 mM sodium pyruvate and 1 mM L‐glutamine. We prepared ndSH‐SY5Y cells using a modified differentiation protocol according to previously described methods (Agholme et al., 2010 (link); Encinas et al., 2000 (link); Krishtal et al., 2017 (link)).
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2

Primary Culture of Mouse Cerebellar Astrocytes

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Primary culture of mouse cerebellar astrocytes (25 (link), 26 (link)) was prepared using C57BL/6 pregnant mice (Japan SLC). Cerebella from postnatal day one of pups were dissected then digested in Hank’s balanced salt solution (Wako) containing 2.5% trypsin (Wako). Cerebellar tissue was incubated at 37°C for 30 min with continuous shaking. Mixed cerebellar tissue was centrifuge at 3500 rpm for 15 minutes at 4°C, the supernatant was discarded, and cells were resuspended in an astrocyte culture medium (high-glucose DMEM (Wako), 10% heat-inactivated FBS, and 1% penicillin/streptomycin). Cells were counted and 10–15 × 106 cells were plated on Collagen I coated 10–cm dishes (Iwaki, Japan), then incubated at 37°C in a CO2 incubator. The astrocyte culture medium was replaced with PBS on day 3 in vitro (DIV3). Oligodendrocyte precursor cells were removed by shaken the dishes for 2–5 minutes. Discard the supernatant then replaced with a fresh astrocyte culture medium. On DIV7, astrocytes were harvested and then plated on Collagen I coated 6 or 24 well dishes (Iwaki). Cells were then used for co-culture studies.
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3

Culturing HeLa, HEK-293, and SAOS-2 Cells

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HeLa cells were cultured in minimum essential medium (MEM, Gibco, 11095072, Thermo Fisher Scientific, Waltham, MA, USA) with 10% fetal bovine serum (FBS, CCP-FBS-BR-500, Cosmo Bio, Tokyo, Japan) and 1% penicillin-streptomycin (10,000 U/mL, Thermo Fisher Scientific, Waltham, MA, USA) for 3 days. The adherence of HEK-293 cells to the Petri dish was relatively weak; hence, the glass Petri dish was coated with fibronectin before seeding cells. For HEK-293 cells, glass Petri dishes were first coated with fibronectin and placed in humidified atmosphere incubator with 5% CO2 at 37 °C. After coating the dish with fibronectin, HEK-293 cells were cultured. Both HEK-293 and SAOS-2 cells were cultured using high glucose DMEM (FUJIFILM Wako Pure Chemical Co., Ltd., Tokyo, Japan) with 10% FBS and 1% penicillin–streptomycin (PS).
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4

Culturing Neural Stem Cells with Amyloid-beta Treatment

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A neural stem cell (NSC) line (NMW7) was generated from a mouse fetal brain, as described previously [57 (link)]. The cells were cultured with medium containing high glucose DMEM (Wako Pure Chemicals, Richmond, VA, USA): F12 ham (Wako) 1:1, bFGF (PeproTech, Rocky Hill, NJ, USA), 20 ng/mL, EGF (peproTech), 20 ng/mL, N2 supplement (ThermoFisher, Waltham, MA, USA), and 2% FBS (Gibco, Invitrogen) in an attached culture condition. The NSC was sub-cultured every 48 h. During stimulation, high glucose DMEM medium containing 0.2% FBS, with or without indicated concentrations of Aβ1–42 (Peptide Institute, Osaka, Japan), was used. Aβ1–42 was added to the culture as a monomer, and the stimulations were continued for the indicated times.
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5

Insulin Secretion Assay with Conditioned Media

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The procedures for primary culture of whole-mount islets have been described elsewhere.9 (link) For experiments using conditioned medium, the following procedures were employed: After pancreatic fibroblasts had been treated with AGE or HMGB1 for 24 h, the conditioned medium was collected and stored in a freezer until use. INS1E cells were seeded at 1 × 105 cells/ml in 24-well plates. After attachment, the cells were grown stably for 48 h, and subsequently the culture medium was replaced with each of the conditioned media (control, AGE or HMGB1 with or without MK615) from fibroblasts. After 24 h of pre-incubation with conditioned medium, high-glucose DMEM (Wako) was replaced with conditioned medium and the cells were incubated for another 2 h (high glucose). This replacement of the medium (glucose concentration in the conditioned media and high-glucose DMEM, < 11 mM and 25 mM, respectively) was able to mimic the conventional glucose-stimulated insulin assay. A rat insulin assay kit (Morinaga, Kanagawa, Japan) was used to quantify the amount of secreted insulin, and the colorimetric signal was detected with a plate reader (InfinitePro200, Tecan, Männedorf, Switzerland). The concentration was calculated based on a standard curve.
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6

HMGB1-Deficient Murine Melanoma Cells

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Murine melanoma B16F10 cells were purchased from the American Type Culture Collection (ATCC) through Summit Pharmaceuticals. The cells were cultured in high glucose D‐MEM (Fujifilm Wako Pure Chemical, Osaka, Japan) supplemented with 10% FCS (Thermo Fisher, Waltham, MA), L‐glutamine, and 50 μg/ml gentamicin at 37°C in a 5% CO2 incubator. The B16F10‐derived HMGB1‐KO clones (G9 and A10E2) were previously established in our laboratory.21 The linear donor was inserted around cDNA position 198 in exon 2 of the HMGB1 gene, which was 25 nucleotides downstream of the initiation codon, and all the functional domains of HMGB1 were disrupted in these KO clones. The KO cells from frozen stock were used within 1 month of in vitro culture after thawing. Under this condition, no expression of HMGB1 was confirmed.
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7

Culturing Human Lung Cancer Cell Lines

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Human embryonic kidney 293FT cells (Thermo Fisher Scientific) were cultured in high-glucose DMEM (Fujifilm Wako) supplemented with 10% fetal bovine serum (FBS). H3122 cells, which were gifted by JA Engelman (Massachusetts General Hospital Cancer Center, Boston, Massachusetts, USA), were cultured in RPMI-1640 medium (Wako Pure Chemical Industries) supplemented with 10% FBS and 100 μg/mL of kanamycin. HCC78 was obtained from DSMZ (Germany). HCC78xe3 ROS1-WT cell is a subclone of HCC78, generated by repeating subcutaneous implantation and in vitro cell culture 3 times, and induced SLC34A2-ROS1 overexpression as previously described (84 (link)). ALK fusion–positive and ROS1 fusion–positive NSCLC PDC lines were established from the patients’ pleural effusion. All patients provided informed consent for the genetic and cell biological analyses, which were performed in accordance with a protocol approved by the Institutional Review Board of the JFCR. NSCLC PDC lines JFCR-028-3 and JFCR-168 and HCC78 were cultured in RPMI and Ham’s F12 medium with 10 mM HEPES (Nacalai Tesque), 15% FBS, and 1× antibiotic-antimycotic mixed stock solution (Nacalai Tesque).
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8

Cell Culture Conditions for Neuroblastoma, Kidney, and Monkey Cell Lines

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SH-SY5Y cells derived from human neuroblastoma were grown in Dulbecco’s modified Eagle medium (DMEM):Nutrient Mixture F-12 (Wako, Osaka, Japan) supplemented with 10% fetal bovine serum (FBS), 100 IU/mL penicillin, and 100 μg/mL streptomycin at 37°C with 5% CO2. Vero cells derived from African green monkey kidney epithelial cells were grown in Eagle’s minimum essential medium (MEM) (Wako), supplemented with 10% FBS, 100 IU/mL penicillin, and 100 μg/mL streptomycin at 37°C with 5% CO2. Human embryonic kidney 293T (293T) cells were cultured in high-glucose DMEM (Wako) supplemented with 10% FBS, 100 IU/mL penicillin, and 100 μg/mL streptomycin at 37°C with 5% CO2.
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9

Cell Culture Conditions for Liver Cancer

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Cell lines were incubated at 37°C in 5% CO2 in the following media containing 10% FBS and 100 units/mL penicillin–100 μg/mL streptomycin: EMEM (Wako, Osaka, Japan) for Hep3B2.1‐7; DMEM (Wako) for HuH‐7; Williams’ Medium E (Sigma–Aldrich, St. Louis, MO) for JHH‐7; high‐glucose DMEM (Wako) for SK‐HEP‐1, HuH‐1, and PLC/PRF/5; RPMI‐1640 (Wako) for Li‐7, SNU‐398, and SNU‐449; and RPMI‐1640 (Invitrogen, Carlsbad, CA) supplemented with 10 μg/mL insulin and 2 μmol/L hydrocortisone, for LIXC‐012.
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10

Direct Conversion of Fibroblasts to Brown Adipocytes

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After reaching 80–90% confluence of each human fibroblast line, the medium was changed to start direct conversion into brown adipocyte-like cells with adipocyte medium prepared from high-glucose DMEM (043–30085, Wako, Osaka, Japan) supplemented with rosiglitazone (Wako) and MK425 (Takara Bio Inc., Shiga, Japan). MK425 contains ascorbic acid, biotin, pantothenic acid, triiodothyronine, octanoic acid, insulin, dexamethasone, IBMX (3-isobutyl-1-methylxanthine), FBS, and penicillin/streptomycin. The final concentration of rosiglitazone was set to 1 μM concentration. Small chemical compounds were purchased from Wako, except for CHIR99021 (Cayman Chemical, MI, USA), and added to the adipocyte medium at the following final concentrations: CHIR99021 (1 μM), PD0325901 (1 μM), SB-431542 (2 μM), LDN-193189 (1 μM), Pifithrin-α (5 μM), Dorsomorphin (1 μM), and Forskolin (7.5 μM). Human fibroblasts were cultured in the adipocyte medium either with or without each chemical cocktail as indicated for 3 weeks. The medium was changed every 3 days. For maturation, the cells were further cultured in the adipocyte medium only for 1 week.
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