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4 protocols using donkey anti rabbit igg

1

Quantitative Microscopy of A. fumigatus Infection

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For CLSM analysis, 0.5 × 106 ds Red A. fumigatus conidia were applied to the apical surface and at several time points post infection as indicated in the Figure legends or Results, inocula were removed by gentle suction and the well was fixed using 4% paraformaldehyde solution for 10 minutes. After fixation the cells were treated as described above except staining the slides for mucin using rabbit anti-human MUC5B antibody (1:80; Abcam), followed by donkey anti-rabbit IgG (1:50 Biolegend). Again, actin localized to tight junctions was identified by using phalloidin-650 (1:20; Cell Signaling Technology). Cilia were stained using an anti-tubulin antibody (1:10; BD Pharmingen), and nuclei using Hoechst 33342 (Cell Signaling Technology). Images were captured using a Leica SP5 confocal laser scanning microscope and analysed using the LAS AF Lite or Imaris software. For each condition at least 50 cells were analyzed and used for quantifications.
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2

HTLV-I Tax Antibody Purification and Labeling

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The medium used throughout was RPMI 1640 medium (Sigma-Aldrich. Inc., St. Louis, MO, USA) supplemented with 10% fetal calf serum (FCS), 100 U/ml penicillin and 100 µg/ml streptomycin (hereinafter called RPMI medium). Mouse monoclonal antibodies (mAbs) specific for HTLV-I Tax (clone Lt-4), OX40 (clone B-7B5), and KLH (IgG3, clone KLH-3, Tanaka et al., unpublished) were purified in our laboratory from ascites fluids of CB.17-SCID mice carrying the appropriate hybridomas. The ascites fluid samples were subjected to ammonium sulfate precipitation followed by gel filtration with Superdex G-200 (GE Healthcare, Tokyo, Japan). mAbs were labeled with either fluorescein isothiocyanate (FITC) or HiLyte Fluor™ 647 using commercial labeling kits (Dojindo, Kumamoto, Japan) according to the manufacturer’s instructions. FITC-, PE- or PE-Cy7-labeled mouse mAbs against human CD3, CD4, CD8, CD14, CD19, CD56, and CD83 (clone H15e), and FITC-labeled goat anti-rat IgG, donkey anti-rabbit IgG, and HRP-labeled goat anti-rat IgG antibodies were purchased from BioLegend (Tokyo, Japan). Rabbit polyclonal IgG anti-rat CD83 antibody was obtained from Sino Biological (Beijing, China). Prostaglandin E2 (PGE2) was purchased from Sigma-Aldrich. Inc., (St. Louis, MO, USA).
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Immunostaining of Neuronal and Glial Cells

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Cells grown on coverslips were first subjected to fixation and permeabilization with BD Cytofix/CytopermTM Kit. Then, samples were incubated with primary antibodies against TUBB3 and glial fibrillary acidic protein (GFAP, Poly28400, BioLegend), followed by fluorescence-conjugated secondary antibodies of rat anti-mouse IgG2a (BioLegend) and donkey anti-rabbit IgG (BioLegend). Counterstain for the nuclei was performed using diamidino-2-phenylindole (DAPI, Sigma-Aldrich). After washing, specimens were mounted with Dako fluorescence mounting medium (Agilent, Santa Clara, USA) and examined under a Leica confocal microscope.
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4

Antibody Validation for PARP1 Detection

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Antibodies used for Western blots included: anti-rec-PARP1, a rabbit polyclonal raised against recombinant PARP1 (Enzo Life Sciences ALX-210–302-R100; 1:4000 dilution); anti-N-ter-PARP1, a rabbit polyclonal raised against the N-terminal half of recombinant PARP1 (Active Motif Ab 2793257, 1:2000 dilution); anti-C-ter-PARP1, an affinity-purified mouse mAb that recognizes an epitope in the C-terminal NAD binding and catalytic domain of human PARP1 (clone 7D3–6, BD Biosciences #556493; 1:500 dilution); anti-cc-PARP1, a mouse mAb specific for the neo-epitope generated at the N-terminal of the 89 kD PARP1 fragment formed after cleavage by apoptotic caspases between Asp214/Gly215 (clone F21–852, BD Biosciences #552596, 1:1000 dilution). Secondary detection was with HRP-conjugated goat anti-mouse IgG or donkey anti-rabbit IgG (BioLegend, #405306 and #406401, respectively; 1:5000 dilution). Immune complexes were visualized using the SuperSignal West system (Pierce). Specificity of PARP1 Abs for full-length 113 kD PARP1 and its cleavage products was assessed by Western blots of whole cell extracts treated with staurosporine (EMD Millipore; 1 μM, 1 hr), a kinase inhibitor that induces apoptotic PARP1 cleavage (Fig. S1A).
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