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Siscr

Manufactured by RiboBio
Sourced in China

The SiSCR is a laboratory equipment designed for the analysis of small interfering RNA (siRNA) and small hairpin RNA (shRNA) in biological samples. It is a specialized tool used for the detection and quantification of these RNA molecules, which play a crucial role in gene silencing and other cellular processes. The SiSCR provides a reliable and efficient method for researchers to study the expression and function of siRNA and shRNA in their research.

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7 protocols using siscr

1

Characterization of lncRNA ZFAS1 and RALY in cancer cells

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ZFAS1 pcDNA3.1 vector (ZFAS1), RALY pcDNA3.1 vector (RALY) and empty vector (vector) were subcloned into the vector pcDNA3.1 (Invitrogen, Carlsbad, CA, United States). miR-193a-3p mimic, negative control oligonucleotides (mimic-NC), miR-193a-3p inhibitor, negative control oligonucleotide (NC inhibitor), small interfering RNA of ZFAS1 or RALY (si-ZFAS1, si-RALY) and scramble siRNA of ZFAS1 or RALY (siSCR) were purchased from RiboBio (Guangzhou, China). Cells were transfected using lipofectamine 2000 (Thermo Fisher, CA, United States) following to the manufacturer’s protocols. qRT-PCR was performed at 48–72 h later to determine the transfection efficiency. For further in vivo experiments, sh-ZFAS1 and sh-SCR were obtained from RiboBio (Guangzhou, China) and constructed into HB cell lines.
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2

RIPK3 Silencing in OGD Model

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Small interfering RNA duplexes (siRNA) targeting RIPK3 (ID246240) (si-RIPK3, Ribobio, Guangzhou, China) or nonspecific sequences (Scrambled) (si-Scr, Ribobio) without modification were synthesized. Ten nmol of siRNA was transfected into the cells. The same concentration of the nonspecific sequence was used as the scrambled control. Cells were cultured for 24 h and subjected to OGD, as above.
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3

Knockdown of ATG5 and P62 in NP Cells

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Knockdown of ATG5 or P62 in NP cells was carried out by transfection with small interfering RNA (siRNA). Target siRNA and scrambled siRNA (si-scr) were synthesized by RiboBio (Guangzhou, China): ATG5-siRNA sequence 5′-GCUAUAUCAGGAUGAGAUATT-3′ and P62-siRNA sequence 5′-GUGUGAAUUUCCUGAAGAATT-3′. The siRNAs were transfected with Lipofectamine 2000 (Invitrogen) in NP cells according to the manufacturer's instructions. Transgenic efficacy in NP cells was detected using quantitative real-time polymerase chain reaction (qRT-PCR) at 48 h after transfection.
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4

Downregulation of eIF3c in Cells

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We seeded and cultured these cells in six-well plates at 37 °C for 24 h. When the cells reached 50–70% confluence, they were infected with a small interfering EIF3C-1 RNA (si-eIF3c-1, siRNA: 5′-GCAGGACAACATTCAGCAT-3′), a small interfering eIF3c-2 RNA (si-eIF3c-2, siRNA: 5′-GCACACCTACTACAAGTTT-3′) and a negative control siRNA (si-SCR) which were all constructed by RiboBio (Guangzhou, China). Lipofectamine 3000 (Invitrogen) was used for transfections according to the manufacturer’s instructions. The efficiency of the transfections was investigated after 48–72 h using real-time PCR (RT-PCR).
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5

Modulation of miR-106b, miR-93 and PTEN in Breast Cancer

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MiR-106b mimics, miR-93 mimics, negative control oligonucleotides (miR-NC), miR-106b inhibitors (anti-miR-106b), miR-93 inhibitors (anti-miR-93), negative control oligo-nucleotide (anti-miR-NC) and PTEN pEGFP-N2 vector (PTEN), empty vector (vector), small interfering RNA of PTEN or Akt (siPTEN, siAkt), scramble siRNA of PTEN or Akt (siSCR) were purchased from RiboBio (Guangzhou, China). MiR-106b and miR-93 level was enhanced by miR-106b mimics or miR-93 mimics and upregulated PTEN was completed by transfection with PTEN in MCF-7 cells. MiR-106b, miR-93 and PTEN were knocked down using anti-miR-106b, anti-miR-93 or siPTEN in MDA-MB-231 cells. Transfection was performed using the Lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. The transfection efficiency was evaluated by fluorescence microscopy by calculating the percentage of fluorescein-labeled cells.
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6

Overexpression of HOTAIR and FUT2 in Chondrocytes

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For overexpression of HOTAIR and FUT2, HOTAIR or FUT2 cDNA was cloned into the multiple cloning site of the pcDNA3.1 vector (Invitrogen, Carlsbad, CA, USA). MiR-17-5p mimic, negative control oligonucleotides (miR-NC), miR-17-5p inhibitor, negative control oligonucleotide (NC inhibitor), small interfering RNA of HOTAIR or FUT2 (siHOTAIR, siFUT2), scramble siRNA of HOTAIR or FUT2 (siSCR) were purchased from RiboBio (Guangzhou, China). The chondrocytes were seeded into 6-well plates and transfection was performed by using Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA). After 48 h of transfection, chondrocytes were stimulated with IL-1β (10 ng/ml) for the 24 h and used for further analysis.
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7

Overexpression and Silencing of Key Regulators in Chondrocytes

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The cDNA of LEF1, circRNF121, and MYD88 was cloned into the multiple cloning site of the pcDNA3.1 vector (Invitrogen, USA). MiR-665 mimic, negative control oligonucleotides (miR-NC), miR-665 inhibitor, negative control oligonucleotide (NC inhibitor), small-interfering RNA of LEF1, circRNF121, or MYD88 (siLEF1, sicirc-1, sicirc-2, sicirc-3, and siMYD88), and scramble siRNA of LEF1 circRNF121 or MYD88 (siSCR) were purchased from RiboBio (Guangzhou, China). Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA) was used for the transfection assay in a 6-well plate with seeded chondrocytes. Q-PCR was used to detect the expression of mRNA. Transfection efficiency was detected by fluorescence microscope (OLYPAS, Japan). After 48 h, chondrocytes were stimulated with IL-1β (10 ng/ml) for 24 h and used for further analysis.
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