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9 protocols using ultraview vox spinning disk

1

Live Imaging of Calcium Dynamics

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Images were acquired through a 63X objective with the inverted microscope Eclipse Ti-E (Nikon) paired with UltraVIEW VoX Spinning Disk (PerkinElmer). Control of hardware as well as intensity measurements were performed with Volocity software (PerkinElmer). Imaging was performed in the GFP-channel at 488 nm excitation for both of the calcium sensors. Cells were imaged for approximately 2 minutes with a frame rate of 2 frames per second including around 20 frames before the injury was induced.
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2

Overexpression of PfCARL Protein

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The full-length coding sequence for pfcarl (PF3D7_1113300) was amplified from genomic DNA using primers pfcarl LocF/pfcarl LocR and subcloned into a pDC2-based expression vector downstream of the P. falciparum calmodulin promoter, yielding the expression plasmid pDC2-PfCAM-pfcarl-FLAG-attP-BSD. This expression plasmid was transfected into the NF54-attB parasite line together with the pINT plasmid for use in integrase-mediated recombination performed with attP × attB (44 (link)). The parasites selected with 2.5 nM WR99210–2 µg/ml blasticidin–250 µg/ml G418 (45 (link)). Parasites were imaged using a confocal UltraView Vox spinning disk (PerkinElmer) and the indicated antibodies.
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3

Laser-induced Lysosomal Dynamics in MCF7 Cells

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MCF7 eGFP-LC3 cells grown in MatTek imaging-culture dishes were subjected to laser injury as described previously. Twenty minutes or 6 hours after injury, cells were fixed with 4% paraformaldehyde and permeabilized with ice-cold methanol and blocked in Dulbecco’s PBS/5% goat serum (Dako, X0907)/1% BSA/0.3% Triton X-100 and stained with primary antibody against human LAMP2 (DSHB H4B4; 0.8 μg/ml). Samples were incubated with appropriate Alexa Fluor 568–conjugated antibody (Invitrogen, A10037; 1:1000), and images were taken with the inverted microscope Eclipse Ti-E (Nikon) paired with the UltraVIEW VoX Spinning Disk (PerkinElmer) using the 63× objective.
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4

Visualizing Actin Cytoskeleton in Zebrafish Embryos

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Whole-mount phalloidin staining for filamentous actin was performed on 3 dpf embryos as described previously (Gupta et al. 2013 (link)). Briefly, embryos were fixed in 4% PFA overnight at 4°C, then washed as follows: 2 × 10 min in PBS, 2 × 10 min in PBS-T (0.1% Tween-20), 1 × 60 min in PBS-TR (2% Triton X), and 2 × 5 min in PBS-T. Embryos were blocked in PBS-T containing 5% goat serum for 1 hour at RT, and incubated with Alexa Fluor ® 488 phalloidin (1:20, A12379, Invitrogen) overnight at 4°C. Embryos were washed 4 × 15 min in PBS-T before being mounted in 70% glycerol and visualized using a Perkin Elmer UltraVIEW VoX spinning disk confocal microscope.
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5

Spatiotemporal Dynamics of Laser-Induced Cell Injury

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Cells grown in MatTek imaging-culture dish were kept at 37°C in cell imaging media, and a 2-μm circular region was irradiated using a 355-nm ultraviolet ablation laser (Rapp OptoElectronic) with the following settings: 2.6% power, 200-Hz repetition rate, pulse energy > 60 μJ, and pulse length < 4 ns. Images were acquired with the inverted microscope Eclipse Ti-E (Nikon) paired with the UltraVIEW VoX Spinning Disk (PerkinElmer) using the 63× objective. Cells were imaged 4 to 30 s starting before injury and continuing for 5 to 60 min following injury. Control of hardware and intensity measurements were performed with PerkinElmer’s Volocity software.
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6

Microscopy Techniques for Live Cell Imaging

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Bright‐field AO time‐lapse movies were recorded at 37°C and 5% CO2 on an AF7000 microscope equipped with a DFC420C camera using LAS AF software (all Leica). Bright‐field cilia movement was recorded using the same setup equipped with a Hamamatsu C9300‐221 high‐speed CCD camera (Hamamatsu Photonics) at 150 frames per second using Hokawo 2.1 imaging software (Hamamatsu Photonics). Confocal imaging was performed using the following microscopes at 37°C and 5% CO2: SP8X (Leica), LSM710, LSM800 (both Zeiss), and Ultraview VoX spinning disk (Perkin Elmer).
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7

Immunocytochemical Analysis of Actin and Nuclei

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One day prior to reaching the differentiation time points of 0–6 days, cells were plated on glass coverslips coated with poly-L-lysine and immobilized during 16–24 h incubation at 37°C. The cells were fixed with 4% PFA for 10 min and stored in PBS at 4°C. The cells were then permeabilized with 0.1% Triton X-100 for 10 min, blocked with 5% BSA in PBS for 1 h, and incubated with 1:40 Phalloidin 488 (ThermoFisher), which stains F-actin, and 1:5000 Hoescht 33342 (ThermoFisher), which stains DNA, in PBS for 30 min. The coverslips were washed 3 times with 0.1% Tween-20 in PBS for 5 min, mounted to glass slides with Prolong Gold (ThermoFisher), cured overnight, and sealed. Confocal images were obtained using a Plan-ApoChromat 63X/1.4 NA oil objective on a Axiovert 200M inverted microscope (Zeiss, Oberkochen, Germany) with a UltraView Vox spinning disk (Perkin Elmer, Waltham, MA) and C11440-22C camera (Hamamatsu, Hamamatsu City, Japan). Volocity imaging software (Perkin Elmer) was used to acquire the raw images, perform uniform contrast adjustments, and generate the final images, which represent the maximum intensity projections of the z-stacks. Each cell was scored manually into one of three morphological types.
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8

Endothelial Fatty Acid Uptake Assay

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HUVECs or HCMECs were plated onto 24-well plates and pre-treated with 1 µM apelin for 24 hours in serum-free medium or subjected to APLNR knockdown for 48 hours before being incubated with 2 µM BODIPY (D3823, Life Technologies) for 90 min. Cells were washed twice with ice-cold PBS, and fluorescence was measured using a fluorescence plate reader (BioTek). To visualize the fluorescence after BODIPY uptake, the cells were fixed in 4% PFA for 10 min at room temperature and analyzed by using fluorescence microscopy (PerkinElmer UltraVIEW VoX Spinning Disk).
To evaluate the effects of apelin, APLNR, or FABP4 on FA transfer through the endothelial layer, HUVECs and HCMECs were incubated with 1 µM apelin for 24 hours or transfected with small interfering RNA (siRNA) against APLN and/or APLNR. To determine the effect of FABP4 inhibitor BMS309403 on FA uptake, cells were subjected to APLN and APLNR knockdown for 24 hours and incubated with the indicated concentrations of BMS309403 for 24 hours. Cells were then plated on Transwell inserts (0.4-µm pore size; 3413, Costar) in 24-well plates, and 2 µM BODIPY was added to the top chamber. Fluorescence was measured from the bottom chamber at the indicated time points using a fluorescence plate reader (BioTek).
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9

Spinning Disk Microscopy Protocol

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Perkin Elmer UltraVIEW Vox Spinning Disk, with a 40x magnification oil immersion UMPlanFl lens, was used to image the samples. Image volumes were acquired with Z step size of 0.2 μm and different fields of view were stitched together with 20% overlap using Perkin Elmer software.
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