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5 protocols using dual ajs esi source

1

Metabolic Flux Analysis by Q-TOF Mass Spectrometry

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Metabolic flux analysis was performed on a 6550 Q-TOF mass spectrometer with Dual AJS ESI source (Agilent Corporation, MA, USA) equipped with a 1260 RRLC system (Agilent Co.).
LC separation was conducted under both acidic and basic conditions using a Waters BEH amide column (2.1 × 100 mm, 1.7 μm) at a column temperature of 35 °C. Mobile phase A was 95:5 acetonitrile: water with 10-mM ammonium acetate. Mobile phase B was H2O with 10-mM ammonium acetate. Ammonium hydroxide (0.05%) and acetic acid (0.05%) were added in basic and acidic LC conditions, respectively.
The injection volume was 5 μL, and the flow rate was 0.25 mL/min. The basic gradient conditions were 0 min, 15% B; 12 min, 40% B; and 15 min, 47% B. The acidic gradient conditions were 0 min, 5% B; 5 min, 30% B; 6 min, 50% B; and 12 min, 50% B. The MS parameters were set as follows: Gas Temp, 200 °C; Drying Gas, 14 l/min; Nebulizer: 35 psig; sheath gas temp, 350 °C; sheath gas flow: 11 l/min; VCap, 3500 V; Nozzle Voltage, 600 V; Fragmentor, 380 V; and Octopole RF, 750 V. The data were acquired in a mass range from 70 to 1000 m/z in negative ion mode using MassHunter workstation (Agilent Co., MA, USA).
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2

Synthesis and Characterization of Heterocyclic Compounds

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Commercially available reagents were used without further purification. Reactions were monitored by thin layer chromatography with silica gel 60 F254 plates (E. Merck, Darmstadt, Germany). HPLC chromatography was carried out with the Autopurification system by Waters using fluoro-phenyl columns. 1H and 13C NMR spectra were recorded on Bruker AC 200 (1H: 200 MHz, 13C: 50 MHz), Bruker Avance Ultrashield 400 (1H: 400 MHz, 13C: 101 MHz) or Bruker Avance IIIHD 600 spectrometer equipped with a Prodigy BBO cryo probe (1H: 600 MHz, 13C: 151 MHz). Chemical shifts are reported in parts per million (ppm) and were calibrated using DMSO-d6 as internal standard. Multiplicities are denoted by s (singlet), br s (broad singlet), d (doublet), dd (doublet of doublet) and m (multiplet). Melting points were determined with a Büchi Melting Point B-545 apparatus. HR-MS was measured on an Aglient 6230 LC TOFMS mass spectrometer equipped with an Aglient Dual AJS ESI-Source.
Compounds 1 (PZ II 028), 2 (LAU156), 3 (LAU206) and 4 (LAU176) were synthesized and published previously23 (link). Synthesis of 5 (DCBS76) was conducted in analogy to previously outlined synthetic routes23 (link), 44 (link), 45 (link). The synthesis of 6 (DCBS96) was improved as described. Compound 7 (LAU462) was synthesized according to reported protocols23 (link), 46 (link), 47 (link).
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3

Targeted Proteomics MRM Analysis

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All targeted proteomics MRM HPLC-MS/MS analyses were performed using an Agilent 1290 Infinity II LC system equipped with a high-speed pump, a multicolumn thermostat, and a multisampler, which was coupled to a 6470 Triple Quad LC/MS with a DUAL AJS ESI source (Agilent Technologies, Santa Clara, CA, U.S.A.). An ACQUITY UPLC BEH C18 (2.1 mm × 150 mm, 1.7 μm, particle size of 130 Å) column (Waters Corporation, Milford, MA, U.S.A.) was used for analysis. The peptides were loaded and separated over a 10 min gradient using the detailed conditions shown in the Supporting Information (S8) and Table S4.
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4

Chemical Characterization via QTOF-MS

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For chemical characterization, an Agilent 6550 iFunnel quadrupole time-of-flight mass spectrometer equipped with dual AJS ESI source (Agilent Technologies, Palo Alto, CA, USA) was used. MS measurements were performed as described in our previous research [35 (link)].
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5

Synthesis of Thio-substituted Silylated Alkynes

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The syntheses of trimethyl[(3Z)-4-(methylthio)-3-penten-1-yn-1-yl]silane (1a), 37 trimethyl[(3E)-4-(methylthio)-3-penten-1-yn-1-yl]silane (1b), 37 4-(methylthio)-(3Z)-3-penten-1-yne, 60 4-azido-N,N-diphenylbenzenamine (2) 61 and 3,3-dimethyldioxirane 62 were performed in analogy to published procedures. Column chromatography was performed on silica 60 (Merck, 40-63 mm). NMR spectra were recorded on a Bruker Avance III HD spectrometer or on a Bruker Avance DRX-400 spectrometer. UV/vis absorption and fluorescence emission spectra were recorded in 5 mM solutions with a Perkin Elmer Lambda 35 spectrometer and a Perkin Elmer LS 50 B, respectively. An Agilent 6230 LC TOFMS mass spectrometer equipped with an Agilent Dual AJS ESI-source was used for HRMS.
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