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Blocking one buffer

Manufactured by Nacalai Tesque
Sourced in Japan

Blocking One buffer is a laboratory reagent used to prevent non-specific binding during immunoassays and other molecular biology techniques. It is designed to block unoccupied binding sites on a solid support, such as a microplate or membrane, to reduce background signal and improve assay sensitivity and specificity.

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7 protocols using blocking one buffer

1

Western Blotting for Cell Line Analysis

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Western blotting was performed as described previously [21 (link)]. Cells from monolayer and spheroid cultures were rinsed with cooled PBS, and whole-cell lysates were prepared by adding Cell Lysis Buffer M (Wako) supplemented with sodium orthovanadate (V) (Wako), phenylmethylsulfonyl fluoride (Nacalai Tesque, Kyoto, Japan), and Halt™ Protease Inhibitor Cocktail (Thermo Fisher Scientific). Protein concentration was measured using a DC™ protein assay kit (Bio-Rad Laboratories, Hercules, CA, USA). Equivalent amounts of the protein were separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to an Immun-Blot PVDF Membrane (Bio-Rad). Nonspecific binding sites were blocked by immersing the membrane in Blocking One buffer (Nacalai Tesque) for 30 min at 20°C. Membranes were incubated overnight with diluted primary antibodies for NR4A2 (PA5-13416; Carlsbad, Invitrogen, CA, USA), 1 : 1000 and GAPDH (G8795; Sigma-Aldrich, St Louis, MO, USA), 1 : 20,000 at 4°C. Membranes were then reacted with KPL Antibodies and Conjugates Anti-Rabbit IgG (H+L) Antibody, Human Serum Adsorbed, and Peroxidase-Labeled (Seracare, Milford, MA, USA) secondary antibodies for 1 h at 20°C. After washing the membrane, chemiluminescence was detected using ImmunoStar LD (Wako) and ChemiDoc™ XRS Plus system (Bio-Rad).
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2

Synthesis and Characterization of PEGylated BODIPY Probe

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γ‐Benzyl l‐glutamate was purchased from Chuo Kaseihin (Tokyo, Japan) and MG132 (Z‐Leu‐Leu‐Leu‐al) was purchased from Sigma‐Aldrich (St. Louis, MO, USA). Bis (trichloromethyl) carbonate (triphosgene) was purchased from Tokyo Kasei Kogyo (Tokyo, Japan). Both DMF and DMAc were purchased from Wako Pure Chemicals Industries (Tokyo, Japan). α‐Methoxy‐ω‐amino‐polyethylene glycol (CH3O‐PEG‐NH2; molecular weight, 12 000 Da) was purchased from NOF (Tokyo, Japan). BODIPY TR cadaverine was purchased from Invitrogen (Carlsbad, CA, USA). Blocking One Buffer was purchased from Nacalai Tesque (Tokyo, Japan), and DMEM was purchased from Sigma‐Aldrich. Anti‐hScrib and anti‐p53 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Alexa Fluor 488‐conjugated donkey anti‐mouse IgG and Alexa Fluor 555‐conjugated goat anti‐rabbit IgG were purchased from Invitrogen.
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3

Immunohistochemical Analysis of Transbronchial Biopsies

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Transbronchial biopsy specimens were received from pathology in 5 m sections from paraffin. Slides were de-paraffinized using Histoclear and re-hydrated with serial dilutions of ethanol. Antigen retrieval was performed at 95 degrees for 20 minutes in the presence of DAKO pH9 Target Retrieval Solution (Agilent). Slides were pre-incubated with Blocking One buffer (Nacalai tesque, INC) followed by staining with primary antibody, washing, and staining with secondary antibody and DAPI (table S5). Slides were imaged using an EVOS FL Auto 2 Imaging System (Thermo Fisher) and analyzed using Imaris image analysis software (Bitplane).
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4

Western Blot Analysis of Apoptosis Regulators

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Cell culture was the same as previously described. Whole-cell lysates were prepared for western blotting as we previously performed [22 ]. The samples (2 μg for ABCB1 measurement, 30 μg for others) were equally subjected to 4–15% Mini-PROTEAN TGX Precast Protein Gels (Bio-Rad, Hercules, California, USA) and transferred to Immun-Blot PVDF Membrane (Bio-Rad). After blocking with Blocking One buffer (Nacalai Tesque, Inc., Kyoto, Japan) for 2 h, the membranes were incubated with the indicated antibodies for overnight at 4°C, followed by incubation with horseradish peroxidase-conjugated secondary antibody for 2 h at room temperature. The bands were further dealt with Chemi-Lumi One L solution (NACALAI) and analyzed. The primary antibodies for caspase-8 were obtained from Medical & Biological Laboratories CO., LTD. (Nagoya, Japan) and those for caspase-3, caspase-9, survivin, NF-kappa B p65, p-NF-kappa B p65, Bcl-xL, and Bcl-2-associated X protein (Bax) were from Cell Signaling Technology, Inc. (Danvers, Massachusetts, USA). Primary antibodies for ABCB1 and GAPDH and secondary antibodies goat anti-rabbit IgG H&L (HRP) and rabbit anti-mouse IgG H&L (HRP) were purchased from Abcam (Cambridge, Massachusetts, USA). The density of bands was measured using a LAS4000 fluorescence image analysis system (FUJIFILM, Tokyo, Japan). All experiments were performed three times.
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5

Western Blotting Analysis of Synaptic Proteins

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Protein (5–20 μg) from each sample was subjected to SDS-PAGE on 7–8% acrylamide gels. The individual proteins were separated using SDS-PAGE. After SDS-PAGE, the proteins were transferred from the gel onto polyvinylidene difluoride membranes (Immobilon-FL, Millipore, Bedford, MA, USA) using a Trans-Blot Turbo system. Next, the Blocking One buffer (Nacalai Tesque, Kyoto, Japan) was used to block the membranes at room temperature for 30 min. Depending on the primary antibody, the membranes were incubated overnight at 4 °C or at room temperature for 1 h. Anti-PSD-93 (1:1000), anti-phospho-PSD-93 (T612) (1:100), anti-PSD-95 (1:1000), anti-phospho-MYPT1 (T853) (1:1000), anti-MYPT1 (1:1000), anti-c-Myc (1:1000), anti-EGFP (1:1000), anti-GST (1:1000), anti-phospho-CaMKII (T286) (1:1000), anti-CaMKII (1:1000), anti-SynGAP1(1:1000), anti-GluR1 (1:1000), anti-NMDAR1 (1:1000), anti-ADAM22 (1:1000), and anti-LGI1 (1:1000) were used. The unbound primary antibodies were washed away, and the membranes were incubated with goat anti-rabbit Alexa Fluor 680 and/or goat anti-mouse IRDye 800CW for 1 h at room temperature. The total protein or phospho-proteins were detected by infrared imaging (LI-COR Biosciences Lincoln, NE). The band intensities were quantified using ImageStudio software (LI-COR Biosciences).
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6

Immunodetection of Hsd3b6 using Blue Native PAGE

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The antibody that we developed for Hsd3b6 (ref. 21 (link)) could not be used for SDS–PAGE-based blotting21 (link). We thus employed Coomassie brilliant blue-based blue native PAGE for immunodetection of Hsd3b6. Meibomian glands were homogenized in 50 mM Tris-HCl (pH 7.2) buffer containing 1 mM dithiothreitol and 1× cOmplete Protease inhibitor cocktail (Roche diagnostics), followed by centrifugation at 106,000g. The pellet was resuspended in NativePAGE Sample Buffer (Invitrogen) containing 1 mM dithiothreitol and 1% digitonin and mixed with NativePAGE 5% G-250 Sample Additive (Invitrogen) before loading on the NativePAGE Novex Bis-Tris Gel (Invitrogen). Electrophoresis was performed at a constant current of 1 mA at 4 °C. Proteins in the gel were electroblotted to a polyvinylidene difluoride membrane with a buffer containing 25 mM Tris, 200 mM glycine, 10% methanol and NativePAGE Cathode Additive (Invitrogen) at a constant current of 350 mA for 1.5 h. Membranes were incubated further with PBS containing 0.05% Tween-20 for 24 h to remove Coomassie brilliant blue on the blots. After incubation with a Blocking One buffer (Nacalai), blots were probed for Hsd3b6 (anti-Hsd3b6) and its immunoreactivities were visualized using chemiluminescence. Immunoblot for Per2 was performed as described38 (link). Full-length western blots are presented in Supplementary Information.
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7

Western Blot Analysis of Cell Lysates

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For cell lysis, the cells were washed with phosphate-buffered saline and resuspended in RIPA buffer (150 mM NaCl, 1% Triton X-100, 0.5% DOC [deoxycholic acid], 0.1% SDS, 50 mM Tris-HCl [pH 7.5], and 5 mM EDTA) with protease inhibitor cocktail tablets (Roche) and Benzonase Nuclease (Santa Cruz Biotechnology, Dallas, TX, USA). The protein concentration in each lysate was determined using a BCA Protein Assay Kit (Thermo Fisher Scientific, Waltham, MA, USA). After SDS-PAGE, the proteins were transferred onto Immobilon-P transfer membranes (Millipore, Bedford, MA, USA). The membranes were blocked for 20 min in Blocking One buffer (Nacalai Tesque) and probed overnight with primary antibodies for E-cadherin, ZO-1, SOX2, NANOG, tubulin (all from Cell Signaling Technology, Danvers, MA), fibronectin (Novus Biologicals, Littleton, CO), and β-actin (Sigma-Aldrich, St. Louis, MO, USA). A horseradish peroxidase (HRP)-conjugated anti-rabbit or anti-mouse IgG antibody (GE Healthcare, Buckinghamshire, UK) served as the secondary antibody. Immunoreactive bands were visualized by means of Chemi-Lumi One (Nacalai Tesque). All the assays were performed at least three times. The protein levels were quantified by densitometry in the ImageJ software (National Institutes of Health, Bethesda, MD, USA) and were normalized to β-actin or tubulin.
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