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3 protocols using gata4 c 20

1

Comprehensive Antibody Panel for Cellular Analysis

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The following antibodies were used: Cdx2 (Biogenex, MU392A-UC), CrkL (Santa Cruz Biotechnology, sc-319), Erk1/2 (Cell Signaling, 9102L), Flag2 M2 (Sigma, F1804), Frs2 (H-91; Santa Cruz Biotechnology, sc-8318), Gata4 C-20 (Santa Cruz Biotechnology, sc-1237), Lamin B M20 (Santa Cruz Biotechnology, sc-6217), Nanog (Reprocell, RCAB0002P-F), pAkt (Ser473) (Cell Signaling, 9271), pAkt (Thr308) 244F9 (Cell Signaling, 4056), pErk1/2 (T202/Y2014) (Cell Signaling, 9101), pFrs2 (Tyr196) (Cell Signaling, 3864), pJnk (T183/Y185) (Cell Signaling, 4671S), Plcγ1 (Cell Signaling, 2822), pp38 (T180/Y182) 28B10 (Cell Signaling, 9216), pPlcγ1 (Y783) (Cell Signaling, 2821), Stat3α (Cell Signaling, 8768), and pStat5 (Y694) D4739 (Cell Signaling, 4322). The anti-β-tubulin E7 antibody developed by M. Klymkowsky was obtained from the Developmental Studies Hybridoma Bank developed under the auspices of the National Institute of Child Health and Human Development and maintained by Department of Biology at The University of Iowa.
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2

Western Blot Analysis of Cellular Proteins

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Whole cellular protein extracts were prepared in 95°C Laemmli sample buffer and mechanically sheared by pressing few times through syringes (26 G). Protein concentration was determined using a Pierce™ 660 nm Protein Assay (Thermo Scientific). A total of 5 µg protein per extract was separated on denaturing 10–20% gradient SDS-PAGE gels. Proteins were transferred on PVDF transfer membranes (0.45 µm, Perkin Elmer). Membranes were probed with the following primary antibodies: anti-calretinin (Sigma, HPA007306), mouse anti-actin (#69100) from MP Biomedicals, N-Cadherin (BD Biosciences, 610920), YAP (Cell Signaling 4912), Mesothelin (Rockland Inc. 200-301-A88), GATA4 (C-20) (Santa Cruz sc-1237), p62 (Progen GP62-C), LC3B (Cell Signaling 2775S), p53 (DO-1) (Santa Cruz sc-126), Thy1 (H-110) (Santa Cruz sc-9163), and γ-H2AX (Millipore 05-636). Membranes were then incubated with the secondary antibody rabbit anti-mouse IgG-HRP (A-5420) from Antell, and goat anti-rabbit IgG-HRP (#7074) from Cell Signaling. The signals were detected by enhanced chemiluminescence (ECL™ Western Blotting Reagents, GE Healthcare) and detected on photosensitive film (Super RX Fuji x-Ray Film, Fujifilm). Proteins were quantitated with densitometry using Image J software (Version 1.42q, USA).
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3

Functional Characterization of GATA4-N273K Mutation

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Mammalian expression vector pIRES(+)-GATA4 was used to perform DpnI-mediated site-directed mutagenesis to generate GATA4 N273K (c.819C>A) mutation. Two independent clones were created, sequenced, and assayed in transient transfection assays in quadruplicates on three independent experiments, as described (15 (link)). Lipofectamine 2000 was used to transfect HeLa cells with 0.15μg of pGL3-WNT2 promoter-Luciferase construct (16 (link)), 2ng pRL Renilla Luciferase reporter vector, in conjunction with different amounts of empty vector (pIRES-hrGFP), pIRES-GATA4 or pIRES-GATA4-N273K to reach 0.5μg total DNA using. Firefly and Renilla luciferase activity was assayed using Dual-Luciferase Reporter Assay System (Promega). Binding of nuclear lysates from cells expressing GATA4 and GATA4-N273K protein to P32-labeled oligonucleotides including binding sites for GATA4 was performed as described (15 (link)). Sequences of oligonucleotides used in this assay include a predicted GATA binding site in the pancreatic (P2) HNF4A proximal promoter. Specificity of retardation complex was assessed by preincubating nuclear extracts with 100-fold excess wild type or mutant unlabeled oligonucleotides, or GATA4 antiserum (GATA4 C-20, Santa Cruz, sc-1237). Immunoblot analysis was used to verify that the expression efficiencies for vectors encoding wild type and N273K GATA4 were similar.
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