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25 protocols using amberlite xad4

1

Comparative Analysis of Greek Wine Phenols

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Wines from the four Greek flagship varieties, two from white (Asyrtiko, Malagouzia) and two from red (Xinomavro and Agiorgitiko) grapes, were selected. Vinification process included the fermentation and filtration of generated wine in inox vessels without further maturation in wooden barrels. All wine varieties tested were produced in the year 2020. A basic enological analysis of these wine varieties is presented in Table S2. To remove the contained ethanol, all wines were concentrated in a rotary evaporator (Büchi Labortechnik AG, Flawil, Switzerland) at 40 °C until their volume was reduced by half. Subsequently, an absorption resin treatment was employed using polymeric resin (Amberlite® XAD-4, Supelco, Bellefonte, PA, USA), and the wines were consecutively recovered using analytical grade isopropanol (Fischer Scientific, Pittsburg, PA, USA). Samples were once again dried in a rotary evaporator and lyophilized for complete solvent removal, weighted, and stored in −20 °C. Finally, all 4 varieties were sampled using similar protocols simultaneously to allow us to compare their relative differences in phenol content and antioxidant efficacy.
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2

Grape Pomace Polyphenol Extraction

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Grape pomace was supplied by Union of Santorini Cooperatives, SantoWines. The raw material was dried in a shady, well-ventilated place and extracted with water 100% at 45 °C for 4 h. In continuation, the water extract was treated with absorption resin chromatography (Amberlite XAD4, Supelco, Bellefonte, PA, USA) to remove sugars and to obtain a fraction rich in phenolic compounds. The polyphenolic rich fraction was recovered using analytical grade isopropanol (Fischer Scientific, Pittsburg, PA, USA). The fraction was dried in a rotary evaporator and lyophilized for complete solvent removal.
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3

Purification of P. pastoris Proteins

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The P. pastoris wild type strain (X-33), the pPICZB vector, zeocin, Ni-NTA agarose resin were from Invitrogen (Life Technologies Monza, Italy); PD-10 columns were from Cytiva Europe Gmbh (Milan, Italy); L-[3H]-glutamine and L-[3H]-serine were from Perkin Elmer (Milan, Italy); C12E8 was from TCI Europe (Zwijndrecht, Belgium); cholesterol, Amberlite XAD-4, egg yolk phospholipids (3-sn-phosphatidylcholine from egg yolk), Sephadex G-75, L-glutamine, L-serine, and all the other reagents were from Merck Life Science (Milan, Italy).
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4

Analytical and Preparative Thin-Layer Chromatography

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Analytical TLC was performed on Merck Kieselgel 60 F254 or RP-8 F254 plates of 0.2 mm layer thickness. The plate was visualized by UV light or by spraying with H2SO4/AcOH/H2O (1:20:4), followed by heating at 120 °C for about 1 min. The plates were then heated for 5 min at 120 °C. Preparative TLC was performed on Merck Kieselgel 60 F254 plates, of 0.5 or 1 mm film thickness. Column chromatography (CC) was performed on Fluka (Seelze, Germany) Amberlite XAD-4, on Merck Kieselgel 60 (70–240 µm) and Merck Kieselgel 60 (40–63 µm), or on Baker (Deventer, The Netherlands) RP-18.
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5

Radiolabeled Acetylcholine Binding Assay

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Amberlite XAD-4, egg yolk phospholipids (3-sn-phosphatidylcoline 60%), CHS, Triton-X100, Sephadex G-75, TEA and acetylcholine were purchased from Merck Life Science s.r.l., 20149 Milano, Italy; tetraethylammonium bromide [ethyl-1-14C] was from ARC (American Radiolabeled Chemicals, St. Louis, MO 63146 USA); acetylcholine iodide [acetyl-3H] was from Perkin-Elmer Italia S.p.A. 20126 Milano, MI, Italy. All the other reagents were of analytical grade.
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6

Purification and Characterization of Membrane Proteins

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E. coli Rosetta(DE3)pLysS cells were from Novagen (Rome, Italy); His Trap HP and PD10 columns were from GE Healthcare; l-[3H]histidine was from American Radiolabeled Chemicals (ARC Inc., USA); C12E8, Amberlite XAD-4, egg yolk phospholipids (3-sn-phosphatidylcholine from egg yolk), cholesterol, Sephadex G-75, imidazole, l-histidine and all the other reagents were from Merck KGaA (Germany).
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7

Heterologous Protein Expression and Purification

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His Select Nickel affinity gel (P6611), Monoclonal Anti-polyHistidine-Peroxidase antibody (A7058), Amberlite XAD-4 (06444), egg yolk phospholipids, cholesterol (C3045), Thrombin (605,157), n-Dodecyl β-D-maltoside (D4641), Sephadex G-75 (G75120), L-glutamine (G1626) from Merck Life Science; Isopropyl β-D-1-tiogalattopiranoside (IPTG, A4773) from AppliChem; restriction endonucleases, T4 DNA ligase (EL0014), and Phusion™ High-Fidelity DNA Polymerase (F530S) from ThermoFisher scientific; MegaMan Human Transcriptome Library, BL21 codon plus RIL strain from Agilent technologies; Lemo21(DE3) strain from New England Biolabs; C41(DE3) from Lucigen. Pico-Fluor Plus and L-[3H]-glutamine from Perkin Elmer; pET-28a-Mistic (#85,999) from Addgene.
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8

Extraction and Purification Protocol

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All the solvents, including diethyl ether, methanol, ethyl acetate, and n-hexane were purchased by Levanchimica srl (Bari, Italy). Amberlite® XAD-4, thin-layer chromatography (TLC, silica gel plates Merck 60 F254), and silica gel (0.040−0.063 and 0.063−0.200 mm) were purchased from Merck (Darmstadt, Germany).
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9

Amberlite Resin Purification of Galactoglucomannan

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Two XK 50 columns, (50 mm diameter; 250 mm length) (GE Healthcare Bio-Sciences AB, Uppsala, Sweden) were used of which the first column was loaded with 350 g of Amberlite XAD4 and the second with 400 g of Amberlite IRA958 (Sigma-Aldrich, Saint Louis, MO, USA) [27 (link)]. The flow rate in these columns was 1 mL/min (GP 50 gradient pump, Thermo Fisher Scientific Inc., Waltham, MA, USA) for both the adsorption and wash sequence. After a solution had been pumped through a column, the column was emptied by purging with air using a hose pump. XAD4 was cleaned with 700 mL of 10% ethanol solution and subsequently washed with 1400 mL of deionized water. 5750 g of the AC solution was passed through the XAD4 column after which a sample of 250 g was removed from the adsorption column permeate. The second column (IRA958) was washed with 1400 mL of deionized water and 5500 g of permeate was passed through this column, producing the purest permeate in this series, which was designated adsorption preparation (AD). The yield for each purification step was calculated based on the galactoglucomannan content (g) before and after each purification step and was expressed as % yield. The purification scheme is illustrated in Figure 6.
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10

Purification of His-Tagged Proteins

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E. coli Rosetta(DE3)pLysS cells were from Novagen (Rome, Italy); ECL plus, Hybond ECL membranes were from GE Healthcare; l-[3H]Arg was from Perkin Elmer (Waltham, MA, USA); conjugated anti-His6 antibody, TX-100, Amberlite XAD-4, egg yolk phospholipids (3-sn-phosphatidylcholine from egg yolk), Sephadex G-75, His-Select resin, l-Arg and all the other reagents were from Sigma-Aldrich (Saint Louis, MO, USA).
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