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7 protocols using supersignal west femto chemiluminescent kit

1

Adiponectin Protein Detection in Mouse Serum

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A total of 8 μL of 1:1000 mouse serum was electrophoresed on 2% Metaphor Agarose gels (Lonza, Basel, Switzerland) for 75 minutes at 75 V. Protein was transferred onto polyvinylidene fluoride membranes (Bio-Rad, Hercules, CA) over 60 minutes at 100 V. Blocking was performed using 5% skim milk powder. A 1:10,000 dilution of primary antibody against adiponectin (MAB3608; Merck Millipore) was applied to the membranes. A 1:50,000 dilution of goat anti-mouse horseradish peroxidase antibody (Invitrogen) was applied as a secondary antibody. Visualization was performed using a Supersignal West Femto chemiluminescent kit (Thermo Fisher Scientific, Waltham, MA) on an ImageQuant LAS 500 machine (GE Healthcare Life Sciences).
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2

Atg8 Expression in Malaria Stages

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To determine expression of Atg8 in ring, trophozoite, and schizont stages, parasite pellets were suspended in 10 mM Tris, pH 7.5 and equal volume of 2× SDS-PAGE sample buffer (1× buffer contains 62.5 mM Tris-HCl, 20% glycerol, 2% SDS, 1% β-mercapto ethanol, 0.01% bromophenol blue, pH 6.8) was added to the lysate, and the sample was sonicated (3 pulses of 15 seconds each at 20% amplitude). The sample was incubated at 100°C for 10 min, centrifuged at 24000×g for 20 min, and supernatants were transferred to fresh tubes and used for western blot. The supernatants of parasite lysates (corresponding to approximately 1×108 parasites) were run on a 10% SDS-PAGE gels, and transferred onto the Immobilon-P membrane. The membranes were treated with 1% paraformaldehyde [82] (link), blocked with blocking buffer (5% milk in PBS-Tween 20) for two hours at room temperature, incubated with primary antibodies (rabbit anti-Atg8 at 1/1000, rabbit anti-Hsp70 and mouse anti-β-actin at 1/500), in blocking buffer for overnight at 4°C. The blots were washed with the blocking buffer, incubated with secondary antibodies (HRP-conjugated goat anti-rabbit and HRP-conjugated goat anti-mouse IgGs were used at a dilution of 1/10,000 in blocking buffer) for 1 hour at room temperature, and signal was developed with the SuperSignal West Femto Chemiluminescent kit (Thermo Fisher Scientific) on X-ray film.
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3

Western Blot Analysis of Protein Extracts

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Total cell extracts were prepared using 1X RIPA buffer with 1× Halt protease inhibitor cocktail (Pierce). Cells were lysed for 30 min on ice, and the solution was centrifuged for 15 min at 18,000 × g at 4°C. The supernatant was transferred to a new tube, and protein concentrations were determined using either a Bradford assay (BioRad) or the BCA protein assay kit (Thermo Scientific) in combination with bovine serum albumin (BSA) to generate the standard curve. After quantitation, protein samples (as indicated) were separated on a polyacrylamide-SDS gel and transferred to a polyvinylidene fluoride membrane. The membrane was blocked with 5% (w/v) milk in 1X Tris-buffered saline (TBS) containing 0.1% (w/v) Tween-20 (TBST) for 1 hr, and then probed overnight at 4°C with a tTA-A monoclonal antibody (1:1000, Clontech) or an in-house rabbit polyclonal antibody to APE1 (1:1000). The membrane was washed three times using TBST and incubated with secondary antibody (1:5000, anti-mouse, goat-HRP or anti-rabbit, goat-HRP, Pierce) at room temperature for 1 hr, before washing as above and visualizing with SuperSignal West Femto Chemiluminescent kit (Thermo Scientific) or the ECL Plus detection kit (Pierce) on a ChemiDoc XRS+ (Bio-Rad).
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4

Quantifying PR-A/B Protein Expression

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HESC cells were incubated in serum free media with various agents for 48 hours. Cells were lysed in 1X RIPA buffer (50 mM Tris, pH 7.6, 150 mM NaCl, 1% (v/v) Triton X 100, 0.1% (w/v) SDS) and Roche protease inhibitor (Roche, Madison, WI). Protein concentrations were measured using BCA protein assay reagent (BioRad, Hercules, CA). Protein was separated by 7% SDS-PAGE and transferred onto nitrocellulose membrane. Membranes were blocked in 5% non-fat milk in Tris-buffered saline-Tween (TBS-T-1%). PR-A/B proteins were probed for with antibody (Santa Cruz Biotechnology, Santa Cruz, CA) in 5% milk in TBS-T. Membranes were re probed for actin (Cell Signaling, Danvers, MA) as loading control. Signals were detected using chemiluminescence SuperSignal West Femto Chemiluminescent Kit, (Thermo Scientific, Hanover Park, IL) according to the manufacturer’s protocol on Protein Simple FluorChem E (Santa Clara, CA).
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5

Preparation of Crude Membrane Fractions

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To prepare crude membrane fractions, transformed T87 cells were harvested on a 40 lm nylon mesh (Millipore, Billerica, MA, USA) by filtration, frozen by liquid nitrogen and homogenized in liquid nitrogen using a mortar and pestle. The lysed cells were suspended in a 10-fold volume of extraction buffer containing 50 mM Tris/HCl (pH 8.0), 2 mM EDTA, 20% (v/v) glycerol, 1 mM dithiothreitol and 29 Complete protease inhibitor cocktail (Roche Applied Science, Mannheim, Germany). The suspension was centrifuged at 10 000 g for 10 min at 4 °C to remove any cell debris. After centrifugation of the supernatant at 146 000 g for 40 min at 4 °C, the precipitate obtained was resuspended in extraction buffer. SDS/ PAGE and immunoblotting were carried out as described previously with the modifications as described below [34] .
The membrane was incubated with monoclonal anti-HA Ig (Nacalai Tesque, Kyoto, Japan) at a dilution of 1 : 40 000 and then with anti-mouse IgG conjugated with horseradish peroxidase (GE Healthcare, Piscataway, NJ, USA) at a dilution of 1 : 200 000 in Can Get Signal Immunoreaction Enhancer Solution (Toyobo, Osaka, Japan). A SuperSignal West Femto chemiluminescent kit (Thermo Scientific, Rockford, IL, USA) was used to detect antigens.
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6

Cytokine and Chemokine Quantification in Muscle Tissue

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Muscle tissue samples were disrupted in a homogenizer (Psychotron NS-310EII; Microtec Co, Ltd, Chiba, Japan), and the protein concentrations were determined by the Bio-Rad protein assay (Bio-Rad Life Science, Hercules, CA). The relative expression of cytokines and chemokines in muscle lysates was quantified using the Proteome Profiler Array (Mouse Cytokine Array, Panel A; R&D Systems Inc., Minneapolis, MN). The array was performed according to the manufacturer's specifications with 100 mg of total protein. To achieve maximum assay intensity, the blots were incubated overnight. The chemoluminescence signal was generated by incubation with the Super Signal West Femto Chemiluminescent Kit (Thermo Scientific Pierce, Rockford, IL) for 5 minutes. Images were captured using Image Quant LAS 4000 coupled with Image Quant TL software version 1.51h (GE Healthcare, Tokyo, Japan).
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7

Gastrocnemius Muscle Protein Analysis

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Proteins from gastrocnemius muscle were separated by SDS-PAGE (12% polyacrylamide) and electroblotted onto a nitrocellulose membrane. After blocking with 1% bovine serum albumin, membranes were incubated with the respective antibody at 1:500 to 1:100 dilutions as follows: rabbit anti-mouse C5a (250565; Abbiotech, San Diego, CA), rabbit anti-mouse CD68 (ab125212), rabbit anti-iNOS antibody (ab3523), rabbit anti-myeloperoxidase (ab65871), rabbit antitroponin T T1 (ab83907; Abcam), rabbit anti-CD163 (M-96), rabbit antieIL-1RA (H-110), rabbit anti-acetyl-CoA carboxylase (C83B10), rabbit antieAMP-activated protein kinase (AMPK)b1/2 (57C12), goat antieglyceraldehyde-3-phosphate dehydrogenase (V-18), goat anti-troponin T FS (C-18; Santa Cruz Biotechnology, Inc., Dallas, TX), rabbit anti-MYBPC1 (LS-C144479), and rabbit anti-MYBPC2 (LS-C101947; LSBio, Seattle, WA). Membranes were developed with the Super Signal West Femto Chemiluminescent Kit (Thermo Scientific Pierce), and images were captured using Image Quant LAS 4000 coupled with Image Quant TL software version 1.51h (GE Healthcare).
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