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Nanozoomer rs c110730

Manufactured by Hamamatsu Photonics

The Nanozoomer-RS C110730 is a digital slide scanner designed for high-resolution imaging of histological and cytological samples. It is capable of scanning slides at a resolution of up to 0.46 micrometers per pixel, enabling detailed analysis of cellular and subcellular structures. The device utilizes a high-performance camera and optics system to capture images, which can then be processed and analyzed using specialized software.

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4 protocols using nanozoomer rs c110730

1

Quantifying Myocardial Capillary Obliteration

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At the end of reperfusion, LysM-GFP mice were re-anesthetized, placed in a supine position, their ventral thoracic regions wiped with 70% alcohol and killed by cervical dislocation. Next, 10 ml of PBS with heparin (50 U per ml) was gently infused through the vena cava to avoid blood clots. Hearts were then removed and cut into 1 mm-thick transverse sections and fixed with 2% PFA in PBS for 24 h at 4 °C.
Heart slices (1 mm) designated to histopathological analysis of capillary obliteration were dehydrated through an ethanol series, cleared in xylene, embedded in paraffin wax and consequently sectioned (4 μm) for staining with haematoxylin and eosin. All immunohistochemical procedures were performed with an automated autostainer (Autostainer Plus, Dako) at the CNIC Histology Unit. Images were digitally scanned (Nanozoomer-RS C110730, Hamamatsu) and examined with image analysis software (Tissuemorph, Visiopharm) by blinded observers. Once the lesion was identified, 10–12 images (× 20) were taken at random, and capillary obliteration was scored from 0 to 2, with 0 indicating the absence of capillary obliteration and 2 indicating presence of obstruction in all capillaries.
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2

Histological Analysis of Myocardial Infarction

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For histological analysis, hearts were perfused with cold PBS, fixed in 4% PFA overnight, and embedded in paraffin. Transverse sections (5 μm) were stained with hematoxylin-eosin (H and E) and Masson trichrome stain according to standard procedures.
For immune-labeling of arterioles, samples were stained with anti-SMA, afterward with appropriate HRP conjugated antibody, and finally revealed with 3,3'-diaminobenzidine (DAB) following standard protocols. Whole slide images were acquired with a digital slide scanner (Hamamatsu, Nanozoomer-RS C110730) and then visualized, and exported to TIFF images using NDP.view2 software (Hamamatsu Photonics).
Manual and automated quantifications were performed with Fiji Image J Software (NIH, https://imagej.nih.gov/ij/). The infarct zone (IZ), and the remote zone (RZ) were defined on the basis of H and E-stained sections. In particular, areas containing dying or dead CMs (picnotic or absent nuclei, wavy fibers) or fibrotic areas were defined as IZ, whilst the RZ was considered the healthy LV free wall. Measurements were performed on sections obtained from the midpoint of the infarct.
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3

Visualizing Neutrophil Extracellular Traps in BAL

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NETs were visualized by Giemsa staining of BAL samples (30 (link),31 (link)). BAL samples were centrifuged for 10 minutes at 2,500 revolutions/min. The pellet was resuspended and spread for staining with Giemsa solution. Samples were then inactivated and fixed for 10 minutes at room temperature with an alcohol-based spray fixative for cyto-diagnosis (M-Fix spray fixative). For image analysis, fixed samples were digitalized with a scanner (Nanozoomer-RS C110730, Hamamatsu) and analyzed using NDP view image analysis software (Hamamatsu).
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4

Quantifying Arteriolar Remodeling and Mitochondrial Dynamics

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For immunohistochemistry, whole slide images were acquired with a digital slide scanner (Nanozoomer-RS C110730, Hamamatsu) and then visualized using NDP.view2 software (Hamamatsu Photonics). For immunofluorescence, a confocal microscope (Nikon A1R, Nikon) was used to acquire a 20 × 5-z-stack tile-scan of the whole adductor muscle section every 1.5 µm. Fiji/Image J software was used to manually select superficial adductor muscle area, where the same software automatically selected and counted the remodeled arterioles (> 40 µm diameter)42 (link) in both immunohistochemistry and immunofluorescence samples. Total number of VSMCs (DAPI+/SMA+) and proliferative VSMCs (DAPI+/SMA+/EdU+) were counted within the remodeled arterioles. For analysis of PGC1α in arterioles, a confocal microscope (Leica SP8) was used to acquire 63 × images of individual arterioles along a stack of 5z every 1 µm. The mean fluorescence intensity (MFI) of PGC1α was calculated for the brightest section of the z-stack to avoid the high background obtained when creating maximal projections. To analyze mitochondria in arterioles, a confocal microscope (Leica SP8) was used to acquire 63 x—2 × zoom images of individual arterioles in a stack of 5z every 0.5 µm. TOMM20+/LAMP1+ double positive events were considered as mitolysosomes and their number was normalized by VSMC area (SMA+ area) to obtain mitolysosome density.
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