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Ltq orbitrap xl ft ms

Manufactured by Thermo Fisher Scientific
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The LTQ-Orbitrap XL FT MS is a high-performance hybrid mass spectrometer that combines a linear ion trap with an Orbitrap mass analyzer. It provides high-resolution, accurate-mass measurements and tandem mass spectrometry capabilities for a wide range of analytical applications.

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6 protocols using ltq orbitrap xl ft ms

1

Enoxaparin Structural Characterization by HILIC-FTMS

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Lovenox® and Clexane®, the innovator versions of enoxaparin marketed in the U.S. and Europe were purchased from Sanofi-Aventis (Bridgewater, NJ). Generic versions of Lovenox® were provided by three different manufactures (three current lots of each). Online hydrophilic interaction chromatography (HILIC) Fourier transform mass spectrometry (FTMS) was performed as previous described [4 (link)]. Briefly, enoxaparin injections were diluted into 1 μg/μL and directly injected into a HILIC column (2.0 mm × 150 mm, 200 Å, Phenomenex, Torrance, CA) by an Agilent 1200 autosampler. The LC column was directly connected online to the standard ESI source of LTQ-Orbitrap XL FT-MS (Thermo Fisher Scientific, San-Jose, CA). The enoxaparin intact chain compositions were analyzed under the negative mode. Following raw data acquisition, charge deconvolution was auto-processed using DeconTools [14 –15 (link)] software. Enoxaparin structural assignment was performed by automatic processing with GlycReSoft 1.0 software, developed at Boston University (http://code.google.com/p/glycresoft/downloads/list) [4 (link),12 (link)]. The output on enoxaparin composition from GlycReSoft was then processed using GlycCompSoft to provide automated relative quantification of intact chains present in enoxaparin.
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2

LMWH Separation and Characterization

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The top-down analysis was executed according to a previously described method [14 ]. LMWH-1 and LMWH-4 were separated using a Luna HILIC column (2.0 × 150 mm2, 200 Å, Phenomenex, Torrance, CA). Mobile phase A and B were 5 mM ammonium acetate and water-acetonitrile (2/98, v/v), respectively. The gradient was performed from 5 % A to 70 % A over 7 min at a flow rate of 250 μL/min, and then it was reset to 5 % A. The LC column was directly connected online to the standard ESI source of LTQ-Orbitrap XL FT MS (Thermo Fisher Scientific, San-Jose, CA). All the parameters were optimized using Arixtra™ so as to decrease the insource fragmentation, sulfate loss and the noise/signal in the negative-ion mode. The optimized source parameters were as followed: spray voltage, 4.2 kV; capillary voltage,−40 V; tube lens voltage,−50 V; capillary temperature, 275 °C, sheath flow rate, 30 L/min, auxiliary gas flow rate, 6 L/min. Both the FT mass spectra were obtained at a resolution of 60,000 with 400−2000 Da mass range.
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3

Glycan and Fatty Acid Analysis via FTMS

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Glycan samples were dissolved in HPLC grade water as 0.2–0.5 μg/μL, and each sample (5 μL) was run in direct infusion mode by the standard ESI source of LTQ-Orbitrap XL FTMS (Thermo Fisher Scientific, San-Jose, CA, USA). LC parameters: Agilent Poroshell 120 ECC18 column (2.7 μm, 3.0 × 50 mm), mobile phase A was 5-mM ammonium acetate prepared with HPLC grade water, and mobile phase B was 5-mM ammonium acetate prepared in 98% HPLC grade acetonitrile with 2% of HPLC grade water. The flow was used 50% A and 50% B at a rate of 250 μL/min. The source parameters for FTMS were in the negative-ion mode, a spray voltage of 4.2 kV, a capillary voltage of −40 V, a tube lens voltage of −50 V, a capillary temperature of 275 °C, a sheath flow rate of 30 L/min, and an auxiliary gas flow rate of 6 L/min. All FT mass spectra were acquired at a resolution 60,000 with 200–2000 Da mass range. Fatty acids sample was dissolved in HPLC acetonitrile and used 100% B as flow; all other conditions were the same.
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4

LMWH Separation and Characterization

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A Luna HILIC column (2.0 ×
50 mm, 200 Å, Phenomenex, Torrance, CA) was used to separate
the LMWHs. Mobile phase A was 5 mM ammonium acetate prepared with
HPLC grade water. Mobile B was 5 mM ammonium acetate prepared in 98%
HPLC grade acetonitrile with 2% of HPLC grade water. The gradient
was used from 5% A to 70% A in 7 min then reset to 5% A at a flow
rate of 250 μL/min. The LC column was directly connected online
to the standard ESI source of LTQ-Orbitrap XL FT MS (Thermo Fisher
Scientific, San-Jose, CA). The source parameters for FTMS detection
were optimized using Arixtra (a synthetic ultra LMWH from Sanofi-Aventis,
Paris, France) to minimize the insource fragmentation and sulfate
loss and maximize the signal/noise in the negative-ion mode. The optimized
parameters, used to prevent in-source fragmentation, included a spray
voltage of 4.2 kV, a capillary voltage of −40 V, a tube lens
voltage of −50 V, a capillary temperature of 275 °C, a
sheath flow rate of 30 L/min, and an auxiliary gas flow rate of 6
L/min. External calibration of mass spectra routinely produced a mass
accuracy of better than 3 ppm. All FT mass spectra were acquired at
a resolution 60 000 with 200–2000 Da mass range.
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5

Heparin Oligosaccharide Profiling by HILIC-FTMS

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Each sample (100 μg) was added to 100 μL digestion buffer (50 mmol/L pH 7.0). Heparin
lyase II (10 mU in Tris–HCl buffer, pH 7.0) was added and the sample was digested in 37°C
water bath for 12 hours to produce fragments. Enzymatic digestion was terminated by
removing the enzymes using an YM-3 centrifugal filter unit. The filtrates were lyophilized
and redissolved in 100 µL of distilled water at a concentration of 1 µg/mL. Online
hydrophilic interaction chromatography (HILIC) Fourier transform mass spectrometry (FTMS)
was used to analyze the resulting oligosaccharides.12 (link) A Luna HILIC column (2.0 mm2 × 50 mm2, 200 Å; Phenomenex,
Torrance, California) was connected online to the standard ESI source of LTQ-Orbitrap XL
FTMS (Thermo Fisher Scientific, San Jose, California). Mass spectra were acquired at a
resolution 60 000 with 200 to 1800 m/z range.
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6

Heparin Lyase II Digestion and HILIC-FTMS Analysis

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Samples (100 mg) were added to 100 mL digestion buffer (50 mmol/L NH 4 OAc, 2 mmol/L CaCl 2 , pH 7.0). Heparin lyase II (10 mU in Tris-HCl buffer, pH 7.0) was added and mixed well. Samples were digested in 37 C water bath for 12 hours to produce fragments. Enzymatic digestion was terminated by removing the enzymes using a YM-3 centrifugal filter unit. The filtrates were lyophilized and redissolved in 100 mL of distilled water at a concentration of 1 mg/mL. Online hydrophilic interaction chromatography (HILIC) Fourier transform mass spectrometry (FTMS) was applied to analyze the oligosaccharide fragments. 14 A Luna HILIC column (2.0 Â 50 mm 2 , 200 A ˚; Phenomenex, Torrance, California) was directly connected online to the standard ESI source of LTQ-Orbitrap XL FTMS (Thermo Fisher Scientific, San Jose, California). Mass spectra were acquired at a resolution 60 000 with 200 to 1800 m/z range.
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