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Syngo mr d13

Manufactured by Siemens
Sourced in Germany

Syngo MR D13 is a magnetic resonance imaging (MRI) software platform developed by Siemens Healthcare. It provides the core functionality for controlling and operating Siemens MRI systems. The software is designed to enable efficient image acquisition, processing, and analysis.

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3 protocols using syngo mr d13

1

Multimodal MRI Assessment of Parkinson's Disease

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We acquired MRI data on a 3T Siemens Skyra MRI scanner (Siemens, Erlangen, Germany) equipped with a 32-channel head coil and the Syngo MR D13 software version, located at Singapore General Hospital between September 2014 and 2021. The MRI scan included a DKI sequence with the following parameters: TE = 102 ms, TR = 10.118 s, FA = 90°, in-plane voxel size = 1.8×1.8 mm, slice thickness = 2.5 mm, matrix = 112×112, 55 contiguous slices, anterior-posterior phase encoding, 60 diffusion-weighted volumes (30 at b = 1000 mm/s2 and 30 at 2000 mm/s2) evenly distributed on the unit sphere and 3 volumes with b = 0 mm/s2. It also included a sagittal T1-weighted MPRAGE sequence with the following parameters: TE = 0.002 s, TR = 1.9 s, FA = 9°, in-plane voxel size = 1×1 mm, slice thickness = 1 mm, matrix = 256×256, 256 contiguous slices. No changes to the scanner software or hardware were made during the course of the study.
Clinical assessments included the Movement Disorder Society Unified Parkinson’s Disease Rating Scale Part III (MDS-UPDRS-III; [24 (link)]), Hoehn & Yahr stage [25 (link)] and Montreal Cognitive Assessment (MoCA) [26 (link)], and were obtained by a neurologist during the same visit as the MRI. Patients’ Levodopa equivalent daily dose (LEDD) was recorded. All data were gathered during the “on” medication state.
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2

Comprehensive Abdominal MRI Protocol

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All abdominal scans were performed using a Siemens Aera 1.5T scanner (Syngo MR D13) (Siemens, Erlangen, Germany). We analysed four distinct groups of acquisitions: (1) the Dixon protocol with six separate series covering 1.1 m of the participants (neck-to-knees), (2) a high-resolution T1-weighted (T1w) 3D acquisition of the pancreas volume, (3a) a single-slice multi-echo acquisition sequence for liver fat and iron, and (3b) a single-slice multi-echo acquisition sequence for pancreas fat and iron. Additional details of the MRI protocol may be found elsewhere (Littlejohns et al., 2020 (link)). The protocol covers the neck-to-knee region, including organs such as the lungs outside the abdominal cavity. For consistency with the UK Biobank terminology, we used the term ‘abdominal’ throughout the text.
The UK Biobank has approval from the North West Multi-centre Research Ethics Committee (MREC) to obtain and disseminate data and samples from the participants (http://www.ukbiobank.ac.uk/ethics/), and these ethical regulations cover the work in this study. Written informed consent was obtained from all participants.
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3

UK Biobank Cardiovascular MRI Protocol

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At the time of this study, the UK Biobank had released images in over 45,000 participants of an imaging substudy that is ongoing27 (link),28 . Cardiovascular MRI was performed with 1.5 Tesla scanners (Syngo MR D13 with MAGNETOM Aera scanners; Siemens Healthcare, Erlangen, Germany), and electrocardiographic gating for synchronization28 . Several cardiac views were obtained. For this study, four views (the long axis two-, three-, and four-chamber views, as well as the short axis view) were used. In these views, balanced steady-state free precession CINEs, consisting of a series of 50 images throughout the cardiac cycle for each view, were acquired for each participant28 . For the three long-axis views, only one imaging plane was available for each participant, with an imaging plane thickness of 6 mm and an average pixel width and height of 1.83 mm. For the short-axis view, several imaging planes were acquired. Starting at the base of the heart, 8-mm-thick imaging planes were acquired with ~2 mm gaps between each plane, forming a stack perpendicular to the longitudinal axis of the left ventricle to capture the ventricular volume. For the short axis images, the average pixel width and height was 1.86 mm.
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