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Radioimmunoprecipitation assay (ripa)

Manufactured by Elpis Biotech

RIPA is a lysis buffer used for the extraction and solubilization of proteins from cells and tissues. It contains a combination of detergents, salts, and buffers designed to disrupt cell membranes and organelles, releasing the proteins within for subsequent analysis.

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6 protocols using radioimmunoprecipitation assay (ripa)

1

Evaluation of 7,8-DHF Effects on Melanoma Cells

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SK-MEL-2 and G-361 cells were treated with various concentrations of 7,8-DHF for different incubation times (100, 200, and 300 µM, for 12 and 24 h) and washed twice with DPBS. Cells were homogenized well with a protein extraction solution (RIPA) (ELPIS Biotech Inc., Daejeon, Korea). The extracted proteins were quantified using the Pierce® BCA Protein Assay kit (Thermo Fisher Scientific lnc., Waltham, MA, USA). Equal amounts of protein samples were separated by 8%, 10%, and 15% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) along with protein markers and then transferred to polyvinylidene difluoride (PVDF) blotting membranes. The membranes were blocked at room temperature for one hour with 5% non-fat dried milk in 1 × TBS (Biosesang, Seongnam, Gyeonggi, Korea) containing 0.1% Tween-20 (Bio-Rad Inc., CA, USA) and then incubated overnight at 4 ℃ with specific primary antibodies. After incubation with horseradish peroxidase-conjugated secondary antibodies at room temperature for two hours, immunoreactive bands were visualized using a SuperSignal West Pico PLUS chemiluminescent substrate (ThermoFisher Scientific lnc., Waltham, MA, USA).
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2

Western Blot Analysis of Signaling Pathways

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Cells were lysed in RIPA (radioimmunoprecipitation assay) buffer (Elpis Biotech, Daejeon, Korea) supplemented with a protease inhibitor cocktail (Calbiochem, La Jolla, CA, USA) and protein phosphatase inhibitors (Calbiochem). Protein concentrations were determined using a BCA assay kit (Pierce, Rockford, IL, USA). Proteins (10 μg/sample) were resolved in an SDS-PAGE gel and transferred to a nitrocellulose membrane (Millipore Corp., Billerica, MA, USA). Membranes were blocked with 5% skim milk prior to western blot analysis. Chemiluminescence was detected using an ECL kit (Advansta Corp., Menlo Park, CA, USA) and the Amersham Imager 600 (GE Healthcare Life Sciences, Little Chalfont, UK). The following primary antibodies were used on fresh individual membranes to minimize interference by stripping and reprobing: phospho-JNK (Thr183/Tyr185), JNK, phospho-p38 MAPK (Thr180/Tyr182), p38 MAPK, phospho-ERK1/2 (Thr202/Tyr204), ERK1/2, phospho-Src (Tyr416), Src, phospho-Lyn (Tyr507), Lyn, phospho-Akt (Ser473), Akt, phospho-PI3K p85 (Tyr458/Tyr199), PI3K p85, PI3K p110α, PI3K p110β, PI3K p110γ, PI3K p110δ, phospho-PTEN (Ser380/Thr382/383), PTEN, and Fyn (Cell Signaling Technology, Beverly, MA, USA); and β-actin and phospho-Fyn (Santa Cruz Biotechnology, Santa Cruz, CA, USA). All the raw data from immunoblotting experiments are presented in Figure S4.
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3

Western Blot Analysis of Tat-Trx1 Protein

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After transduction of Tat-Trx1 protein, protein extraction was performed using cell lysis buffer (RIPA; ELPIS BIOTECH, Daejeon, Korea) according to the manufacturer’s instructions. Then, equal amount of proteins were loaded into 15% SDS-PAGE and electrotransferred to a polyvinylidene difluoride (PVDF) membrane. The membrane was blocked with TBS-T (25 mM Tris-HCl, 140 mM NaCl, 0.1% Tween 20, pH 7.5) buffer containing 5% non-fat dry milk or BSA for 1 h. After being washed with TBS-T buffer, the membrane was incubated with the indicated primary antibodies and horseradish peroxidase-conjugated secondary antibodies. Then the membranes were washed with TBS-T buffer three times and the protein bands were identified using chemiluminescent reagents as recommended by the manufacturer (Amersham, Franklin Lakes, NJ, USA) (Shin et al., 2014 (link); Jegal et al., 2019 (link)).
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4

Western Blot Analysis of Cell Signaling Proteins

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Cells were lysed in protein extraction buffer RIPA (Elpis Biotech, Daejeon, Korea) with protein inhibitor cocktail (Roche, Berlin, Germany). Protein quantification was performed using BCA assay (Thermo Scientific, Rockford, IL, USA). Protein (5 to 20 μg/lane) was separated by 6% to 10% SDS-PAGE and transferred to polyd-vinylidene difluoride membrane (PVDF, GE Healthcare Life Sciences, Freiburg, Germany). Blots were blocked with 5% skim milk solution and incubated with primary antibodies overnight at 4℃. Next day, the blot was incubated with the secondary antibody for 1 hour, and was detected with ECL (Recenttec, Taipei, Taiwan). We used primary antibodies at a specific dilution; glyceraldehyde 3-phosphate dehydrogenase (GAPDH, Abcam, Cambridge, MA, USA) diluted 1:5,000, CD44v6 (Abcam) diluted 1:500, CD44 (GeneTex Inc., Irvine, CA, USA) diluted 1:500, β-catenin (ab6302, Abcam) diluted 1:4,000, and active-β-catenin (Merk Miillipore, Burlington, MA, USA) diluted 1:300.
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5

Protein Extraction and Immunoblotting Protocol

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Protein extraction was performed using cell lysis buffer (RIPA; ELPIS BIOTECH, Daejeon, Korea) according to the manufacturer's instructions. Equal amounts of proteins in cell lysates were separated by 15 % SDS-PAGE and transferred to a nitrocellulose membrane (PALL, AZ, USA). The membrane was blocked with TBS-T (25 mM Tris-HCl, 140 mM NaCl, 0.1 % Tween 20, pH 7.5) buffer containing 5 % non-fat dry milk for 1 h. The blocked membrane was incubated with primary antibodies overnight at 4 °C, followed by incubation with horseradish peroxidase-conjugated secondary antibodies (1:10,000; Cell signaling technology, Danvers, USA) at room temperature for 1 h. Primary antibodies were diluted as 1:1000 and purchased CST. The proteins were detected by chemiluminescence according to the manufacturer's instructions (Millipore, MA, USA).
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6

Extraction and Quantification of Salivary Gland Proteins

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A protein extraction solution (RIPA, Elpis Biotech, Daejeon, Korea) containing a Halt TM Protease Inhibitor Cocktail (Thermo Fisher Scientific, Waltham, MA, USA) was applied to lyse the the submandibular salivary gland tissues. Afterward, a Protein Assay Dye Reagent Concentrate (Bio-Rad) was conducted to examine the extracted protein. The levels of ROS in the submandibular salivary gland tissues were examined using a Rat Reactive Oxygen Species ELISA Kit (MyBioSource) according to the manufacturer's instructions.
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