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5 protocols using gpr41

1

Comprehensive Protein Expression Analysis

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Approximately 100 mg of tissues was dissolved in T-PER Tissue Protein Extraction Reagent (including Protease Inhibitor Cocktail) for protein extraction. The concentrations of total protein were measured with BCA protein assay kit. Relative protein expressions were determined by WB according to the previous study. The primary antibodies used in this study were as follows: MUC2 (Novus NB120-11197, Littleton, CO, USA), ZO-1 (Thermo Fisher 40-2200, Waltham, MA, USA), Claudin1 (Abcam ab129119, Cambridge, UK), Occludin (Abcam ab222691, Cambridge, UK), GPR43 (Proteintech 19952-1-AP, Wuhan, China), GPR41 (Abcam ab103718, Cambridge, UK), HIF-1α (Thermo Fisher MA1-516, Waltham, MA, USA), AhR (Novus Biologicals NB100-2289, Littleton, CO, USA), IL-22 (Affinity DF8343, Changzhou, China) and GADPH (Abcam ab181602, Cambridge, UK). Relative levels of target protein were normalized against GAPDH.
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2

CFMB and R-7050 Modulate TNF-α and Histone Acetylation

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(S)-2-(4-chlorophenyl)-3,3-dimethyl-N-(5-phenylthiazol-2-yl) butanamide (CFMB) and TNF-α antagonist R-7050 [44 (link)] (Calbiochem, Darmstadt, Germany); sodium propionate (NaP) (Sigma-Aldrich, St. Louis, MO, USA); pertussis toxin (PTX) (Wako, Osaka, Japan); gallein, cyclopropanecarboxylic acid (CPC) and trichostatin A (TSA) (Tokyo Chemical Industry, Tokyo, Japan); human recombinant TNF-α (PeproTech, Rocky Hill, NJ, USA); polyclonal rabbit antibodies against human β-actin (Abcam), acetyl-histone H3 (Lys9/Lys14), cleaved caspase-3 (Asp175), cleaved caspase-9 (all Cell Signaling Technology, Boston, MA USA), GPR41 (Abcam), and GPR43 (Bioss, Boston, MA, USA); monoclonal rabbit antibodies against HDAC1, HDAC4, HDAC5 (Cell Signaling Technology) and HDAC8 (Abcam); monoclonal mouse antibodies against HDAC3 and caspase-8 (Cell Signaling Technology); and horseradish peroxidase-conjugated anti-mouse, anti-goat and anti-rabbit immunoglobulins (Dako, Glostrup, Denmark) were used in the study.
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3

Immunohistochemical analysis of intestinal markers

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For immunohistochemical staining and imaging, tissue sections were deparaffinized, dehydrated, and subjected to antigen retrieval in citrate buffer (pH 6). The sections were then exposed to 0.3% hydrogen peroxide to block endogenous peroxidase activity, blocked with 5% normal goat serum for 1 h, and stained overnight with primary antibodies against Muc2 (1:1000, Proteintech, Chicago, IL, USA), Ki67 (1:50, Abcam, Cambridge, MA, USA), Lgr5 (1:400, Affinity Biosciences, Cincinnati, OH, USA ), Caspase3 (1:2000, Cell Signaling Technology, Danvers, MA, USA), ZO-1 (1:500, Thermo Fisher Scientific, Waltham, MA, USA), Occludin (1:200, Abcam), GPR41 (1:1000, Abcam), GPR43 (1:500, Abcam), β-catenin (1:200, Cell Signaling Technology), or p-p38 (1:200, Cell Signaling Technology). The sections were washed at least five times with PBS and stained for 30 min with horseradish peroxidase (HRP)-labeled secondary antibody (Zsbio, Beijing, China). The staining was developed with diaminobenzidine chromogenic substrate (Zsbio). The sections were finally counterstained with hematoxylin, dehydrated, and mounted. Tissues were imaged using an Olympus BX46 microscope. Staining intensity was analyzed using the software Image Pro Plus.
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4

Immunofluorescence analysis of intestinal cells

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Tissues embedded in OCT compounds were cut into 5-μm sections. The sections were fixed with cold acetone for 10 min at 4 °C and then blocked with 5% BSA for 1 h. Samples were then incubated overnight with the indicated primary antibodies: Muc2 (1:500, Proteintech), GPR41 (1:400, Abcam) and GPR43 (1:400, Abcam) , CA1(1:200, Proteintech), Lgr5 (1:400, Affinity Biosciences), CHGA (1:100, Abcam), RhoB (1:200, Santa Cruz, CA, USA). Samples were washed with PBS and incubated for 2 h with Alexa Fluor 488-labeled second antibody or Alexa Fluor 594-labeled second antibody (1:500, Proteintech). Following extensive washing, the sections were mounted with DAPI Fluoromount-G gum. Images of sections were obtained using a confocal fluorescence microscope (Leica TCS-SP8, Leica Microsystems, Germany).
SW480 cells were fixed with 4% paraformaldehyde for 15 min and then permeabilized with 0.25% TritonX-100 for 10 min. The cells were blocked with 5% normal goat serum for 1 h, and incubated overnight with primary antibodies against Muc2 (1:500, Proteintech) and Ki67 (1:250, Abcam), followed by a washing step and incubation with Alexa Fluor 488-labeled second antibody and DAPI. Fluorescence was detected using a fluorescence microscope (OLYMPUS IX73, OLYMPUS, Japan).
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5

Cardiovascular Protein Expression Analysis

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The protein expression of CAV-1, ACE2 and GPR41 were detected by western blot. The RIPA lysis buffer (Solarbio) was used to extract total protein from cardiovascular tissue. The extracted protein was separated by 10% SDS-PAGE gel electrophoresis, then transferred to a PVDF membrane, blocked PVDM with 5% skimmed milk powder for 1 hour, and then incubated with CAV-1 (Sigma-Aldrich, Shanghai, China), ACE2 (Proteintech, Wuhan, China) and GPR41 (Abcam, Shanghai, China) antibodies at 4 ° C overnight. The next day, the PVDF membrane was cleaned three times with TBST (Solarbio) for 5 minutes each time. After incubating the correspondding secondary antibody at room temperature for 2 hours, the PVDF membrane was cleaned three times with TBST (Solarbio) for 5 minutes each time again. Observing protein bands using enhanced chemiluminescence (Thermo Fisher Scientific, Inc.).
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