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69 protocols using autosystem xl

1

Quantifying RBC Fatty Acid Profiles

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RBC fatty acid profiles were quantified using gas chromatography as previously described 42 (link), 43 (link). In brief, the fatty acid methyl esters were separated and quantified with an Autosystem XL gas chromatograph (Perkin Elmer, Sheldon, CT). Peaks of interest were identified by comparison with fatty acid standards (Nu-Check-Prep, Elysian, MN). Individual fatty acids were expressed as the molar percentage (mol %) proportion of total fatty acids. RBC phospholipid fatty acid profiles were used to estimate stearoyl Co-A desaturase activity (SCD-1), a surrogate marker of de novo lipogenesis. SCD-1 activity was calculated as the product: precursor ration of:
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2

Carbohydrate structural analysis protocol

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Native and permethylated polysaccharides were hydrolyzed with 2 M trifluoroacetic acid (TFA) at 125 °C for 1 h. Alditol acetates were prepared as previously described [15 (link)]. Permethylation of the Epol H111-INS was achieved following the protocol by Harris [16 (link)].
Analytical GLC was performed on a Perkin-Elmer Autosystem XL gas chromatograph equipped with a flame ionization detector and using He as carrier gas. An HP-1 capillary column (Agilent Technologies, 30 m) was used to separate alditol acetates (temperature program: 3 min at 150 °C, 150–270 °C at 3 °C/min, 2 min at 270 °C), PMAA (temperature program: 1 min at 125 °C, 125–240 °C at 4 °C/min, 2 min at 240 °C), and trimethylsilyl (TMS) (+)-2-butyl glycosides, for the determination of the absolute configuration of the sugar residues [17 (link)], (temperature program: 1 min at 50 °C, 50–130 °C at 45 °C/min, 1 min at 130 °C, 130–200 °C at 1 °C/min, 10 min at 200 °C). GLC–MS analyses were carried out on an Agilent Technologies 7890A gas chromatograph coupled to an Agilent Technologies 5975C VL MSD, using the same temperature programs reported above.
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3

Lipid Extraction and Quantification

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Lipids were extracted by soaking cellulose extraction thimbles (33 × 94 mm) filled with the obtained dried biomass overnight in a solvent mixture comprised of 3:2 (v/v) n-hexane: isopropanol, followed by Soxhlet extraction (El-Sayed et al., 2017 ). Thimbles were then water-washed, dried at 105 °C for 60 min, and re-weighed. Weight differences were used to calculate the initial LC. FAMEs were identified and determined by gas chromatography (GC) using the GC Perkin Elmer Auto System XL. Volumetric lipid productivity (Lp; in mg/day) was calculated as Pdwt × Lc (Liu et al., 2011 (link)), where Pdwt is the sample dry weight at the end of the logarithmic growth phase and Lc is the total LC.
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4

Monosaccharide Composition Analysis by GLC

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In order to determine the composition in terms of neutral monosaccharides, the polysaccharide fraction was hydrolysed with 2 M trifluoroacetic acid (TFA) at 125°C for 1 h and the monosaccharides obtained were derivatised to alditol acetates [22 ]. The products were separated by gas–liquid chromatography (GLC) on a Perkin-Elmer Autosystem XL gas chromatograph equipped with a flame ionisation detector, an SP2330 capillary column (Supelco, 30 m), using He as carrier gas. The temperature program applied was 200–245°C at 4°C/min. Identification of the monosaccharides in Tramesan was achieved by comparing the retention times of each peak with those of standard sugars, previously derivatized in the same way. Quantification was obtained using inositol as internal standard.
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5

Gaseous Products from Bagasse Torrefaction

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An investigation of the gaseous products from torrefaction of bagasse was undertaken in order to determine the composition and yield of the products at a torrefaction reaction temperature of 300 °C. This is necessary to compare the composition of the gaseous products generated during torrefaction of SCB with those produced during its gasification.
The non-condensable gases produced from torrefaction of bagasse were analysed by a Perkin Elmer Autosystem XL gas chromatographic (GC) instrument (Perkin Elmer, New York, NY, USA). Argon was used as a carrier gas at a flow rate of 35 mL·min−1, with gas composition analysis carried out using mixed standard gas as an external standard.
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6

Quantification of Short-Chain Fatty Acids

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SCFA (acetate, propionate, and butyrate) content was determined by gas chromatography (Nelson 1020, Perkin-Elmer, St Quentin en Yvelines, France). The samples were extracted with water (wt g/vol), centrifuged at 17,000 × g for 10 min, and the supernatant collected. The proteins were precipitated using a phosphotungstic acid saturated solution. A volume of 0.1 mL of the supernatant was analyzed using a gas–liquid chromatograph (Autosystem XL; Perkin Elmer, Saint-Quentin-en-Yvelines, France). All samples were analyzed in duplicate. The data was collected and peaks integrated using Turbochromv6 software (Perkin Elmer, Courtaboeuf, France).
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7

Anethole Isolation and Characterization

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Anethole used for the study was obtained from a commercial anise fruit essential oil (Pollena-Aroma, Warsaw, Poland) using flash chromatographic separation on a silica gel column eluted with hexane and mixtures of hexane and diethyl ether (increasing polarity). Separation was monitored using gas chromatography (GC) and gas chromatography-mass spectrometry (GC–MS), and the purity of the obtained compound reached 99 %. GC and GC–MS were performed on a Perkin–Elmer AutoSystem XL equipped with a Perkin–Elmer TurboMass detector and a Perkin–Elmer Elite 5MS column, 30 m × 250 µm I.D., 1 µm film thickness. Identification was carried out on the basis of comparing the mass spectrum of the compound with the mass spectrum listed by the NIST MS Library.
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8

GC-MS Analysis of Hydrogenation Reaction Products

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Gas chromatography (GC) analysis of the reactant (FFald) and products (FFalc, THFalc, 1,4-PeD, 1,2-PeD, 1.5-PeD, and 2-MeTHF) was performed on a PerkinElmer Autosystem XL equipped with a flame ionization detector and an Rtx®-BAC PLUS 1 (i.d. 0.32 mm, length of 30 m, and d.f. 1.8 mm) capillary column of RESTEK, US. Gas chromatography-mass spectrometry (GC-MS) was performed on a Shimadzu GC-17B equipped with a thermal conductivity detector and an RT-βDEXsm capillary column. 1H and 13C NMR spectra were obtained on a JNM-AL400 spectrometer at 400 MHz; the samples for NMR analysis were dissolved in chloroform-d1 with TMS as the internal standard. The products were confirmed by a comparison of their GC retention time, mass, 1H, and 13C NMR spectra with those of authentic samples.
The conversion and yield of products were calculated according to the following equations: where F0 is the introduced mol reactant (FFald), Ft is the remaining mol reactant, and ΔF is the consumed mol reactant (introduced mol reactant − remained mol reactant), which are all obtained from GC analysis using an internal standard technique.
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9

Biodiesel Production from Vegetable Oils

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The biodiesel feedstock, palm oil and Jatropha oil were purchased from local market and Bionas Sdn. Bhd., respectively. Physicochemical properties of both palm and Jatropha oil were shown in Table 4. Catalytic activity was evaluated by performing transesterification reaction in a batch reflux-reactor, which palm or Jatropha oil was mixed with methanol and synthesized solid base catalyst. The mixture was added into round-bottom flask equipped with a reflux condenser and heated at 65°C under constant stirring speed at 800 rpm. Investigation on effect of reaction time (2–6 h) and catalyst amount (1–5 wt.%) was investigated in order to achieve optimum biodiesel yield. Upon the completion of reaction, the product was cooled to ambient temperature and the catalyst was separated thru centrifugation. The excessive methanol was removed using rotary evaporator. Reaction product was then poured into a separation funnel and left overnight for separation with upper layer as biodiesel and glycerin at the bottom layer. The biodiesel product was analyzed by using a gas chromatography (PerkinElmer Autosystem XL, USA) equipped with a flame ionization detector (FID) and connected to a HP-Innowax capillary column (30 m × 0.25 mm × 0.25 μm; J & W Scientific). The content of methyl ester obtained was calculated according to European regulated procedure EN14103.
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10

Quantification of Short-Chain Fatty Acids

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The SCFA (acetate, propionate and butyrate) levels in the culture supernatants were determined by gas chromatography (Nelson 1020, Perkin Elmer, St Quentin-en-Yvelines, France). The overnight culture was centrifuged, and the supernatant was collected. The proteins were precipitated using a saturated phosphotungstic acid solution. A volume of 0.1 mL of the supernatant was analysed using a gas–liquid chromatograph (Autosystem XL; Perkin Elmer, Saint-Quentin-en-Yvelines, France). All the samples were analysed in duplicate. The data were collected, and the peaks were integrated using Turbochromv6 software (Perkin Elmer, Courtaboeuf, France).
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