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21 protocols using ki16425

1

Lysophosphatidic Acid Signaling Modulation

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We used oleoyl-L-α-lysophosphatidic acid sodium salt, LPA (L7260-1MG, Sigma-Aldrich), Ki16425 (potent antagonist of the lysophosphatidic acid receptors LPA1 and LPA3, SML0971-5MG, Sigma-Aldrich) and PF-8380 (Autotaxin inhibitor, Cat. No. HY-13344, MedChemExpress). LPA was reconstituted according to the supplier’s instructions. Ki16425 and PF-8380 were reconstituted in cell culture grade Dimethyl sulfoxide (Hybri-Max DMSO, D2650, Sigma-Aldrich) at 10 mM stock according to the supplier’s instructions and used as indicated in the corresponding figures. DMSO was used as a control when these inhibitors were added. Ki16425 and PF-8380 were added at 15 min prior being co-incubated with LPA, when indicated. Other reagents, unless otherwise is indicated, were purchased from Sigma-Aldrich.
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2

Monocyte Differentiation and Activation

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Blood was sampled from all participants in acid citrate dextrose (ACD) tubes. From blood samples, peripheral blood mononuclear cells (PBMCs) were isolated using Ficoll Paque Plus (GE Healthcare Life Sciences) and centrifugation (2200 rpm, 20 min without brake). Cells were washed in PBS (2x10 min at 1500 rpm) and RPMI 1640 + 10% fetal bovine serum (FBS) (5 min at 1500 rpm) (all products from ThermoFisher). Monocytes were isolated with anti-CD14 microbeads (Miltenyi) and plated in 12-well plates (500 000 cells/well) or in 24-well plates (200 000 cells/well) in RPMI 1640 + 10% FBS and granulocyte macrophage colony-stimulating factor (GM-CSF) (500 U/ml, ImmunoTools). After 72h, media was replaced with fresh media and one of the following: GM-CSF (500 U/ml); IFNβ (100 U/ml, ImmunoTools); IL-4 (1000 U/ml, ImmunoTools); or combined IFNγ (200 U/ml, ImmunoTools) and ultra-pure LPS (10 ng/ml, InvivoGen). Cell lysis and RNA extraction were performed 24h post-activation using Nucleospin RNA extraction kit (Macherey-Nagel). Quality of RNA was confirmed on Agilent TapeStation (RINe>8).
For LPA treatment and antagonist, LPA (Tocris, 3854) and Ki16425 (Sigma, SML0971) were dissolved in 3% BSA to add to the medium at a final concentration of 1µM LPA and 400nM Ki16425 during 24h.
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3

Comparative Analysis of Cell Lines

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Raw264 and HEK293 cells were cultured with DMEM medium containing 10 % fetal bovine serum (FBS) and antibiotics at 37°C in 5 % CO2 incubator. HepG2 cells were cultured in EMEM medium containing 10 % FBS and antibiotics. V5 antibody was from Life technologies (Grand Island, NY). Phospho-PKCδ and cleaved caspase 3 antibodies were from Cell Signaling (Danvers, MA). LPS, ki16425, and β-actin antibody were from Sigma (St. Louis, MO). Immunobilized protein A/G beads and phospho-p38 MAPK antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA). All materials in highest grades used in the experiments are commercially available.
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4

Gintonin Signaling Pathway Investigation

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The following drugs were used: acetylcholine chloride, norepinephrine bitartrate, nicardipine hydrochioride, amiloride hydrochloride hydrate, 3.4.5-trimethoxy benzoic acid 8-(diethylamino) octylester (TMB-8), pirenzepine hydrochloride, ethyleneglycol tetraacetic acid (EGTA), Ki16425, and Oleoyl-L-α-lysophosphatidic acid sodium salt from Sigma-Aldrich Chemical Co., U.S.A., and chlorisondamine chloride from Ciba Co., U.S.A. Gintonin, devoid of ginseng saponins, was prepared from Panax ginseng according to previously described methods [32 ], and supplied by professor Seung-Yeol Nah who is a professor of Konkuk University, Seoul, Korea. Gintonin was dissolved in deionized water and then diluted with Krebs solution before use. LPA and Ki16425 was dissolved in DMSO and then diluted with Krebs solution before use. Drugs were dissolved in distilled water (stock) and added to the normal Krebs solution as required. Concentrations of all drugs used are expressed in terms of molar base.
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5

Pharmacological Screening of Herbal Compounds

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A68930 hydrochloride, (R)-propylnorapomorphine hydrochloride, and cabergoline were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). D-APV, FK506 monohydrate, actinomycin D, L-(−)-norepinephrine (+)-bitartrate salt monohydrate, serotonin, nicardipine, U0126, KN93, oleoyl-L-α-lysophosphatidic acid sodium salt, and Ki 16425 were purchased from Sigma-Aldrich (St. Louis, MO, USA). Neurotransmitter libraries (dopaminergic, adrenergic, serotonergic, cholinergic, histaminergic, metabotropic glutamatergic, and GABAergic) were purchased from Enzo Life Sciences, Inc. (Farmingdale, NY, USA). Ginsenoside kit (Rb1, Rb2, Rc, Rd, Re, Rf, Rg1, and Rg2), used in Fig. 5a, was purchased from Extrasynthese (Genay Cedex, France). Ginsenoside Rb1, Rc, Rd, Re, and Rg1, used in Fig. 5d, were purchased from LKT Laboratories, Inc. (St. Paul, MN, USA). Herbal extract and herbal medicine-derived compound libraries were kindly donated by the Institute of Natural Medicine, University of Toyama (Toyama, Japan). Each herbal extract used in this study was obtained using a standard method described as follows: each herbal medicine (purchased from Tochimoto Tenkaido (Osaka, Japan)) was extracted in water (10-times volume of herbal medicine) at 100 °C for 50 min, evaporated under reduced pressure, and freeze‐dried to obtain a powder extract. Each herbal extract was redissolved in water.
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6

Glioblastoma Cell Lines Activation

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Human glioblastoma-derived cell lines U251 and LN229 (American Type Culture Collection, Manassas, VA, USA (ATCC)) were grown in 10-cm dishes and maintained in DMEM medium (In Vitro, CDMX, Mexico), supplemented with 10% fetal bovine serum at 37 °C under a 95% air, 5% CO2 atmosphere. 1-Oleoyl Lysophosphatidic Acid (LPA; 62215; Cayman Chemical, Ann Arbor, MI, USA) was used to activate LPA receptors and subsequently PKCα. LPA1/3 receptor antagonist Ki16425 (SML0971; Sigma-Aldrich, St. Louis, MO, USA) was added 30 min before the LPA treatment when used. Progesterone (P4) (SML0971; Sigma-Aldrich, St. Louis, MO, USA) was used to activate PR; selective PR modulator, RU486 (M8046; Sigma-Aldrich, St. Louis, MO, USA), was added 30 min before the P4 treatment when used.
The National Institute of Genomic Medicine in Mexico City did proof of cell validation for the U251 cell line and for LN229, we get the ATCC certificate analysis.
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7

Cytosolic Calcium Measurement in Cells

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For the measurement of cytosolic free calcium levels, 20,000 cells were seeded into 96-well cell culture plates 2 days before measurement. Then, they were washed twice with Hank’s balanced salt solution (HBSS) containing 0.2% BSA and 10 mM HEPES (Sigma-Aldrich). Cells were incubated with 10 μM Fura-2 AM in HBSS containing BSA, HEPES and 0,25% pluronic acid (Sigma-Aldrich) for 60 min at 37 °C, were washed twice and 100 μl HBSS+HEPES+BSA were added to each well. Analyses were performed in a microplate fluorometer with integrated pipetting system (BMG Labtech NOVOstar, Offenburg, Germany) at 340 nm resp. 380 nm for excitation and 510 nm for emission. Cells were allowed to adapt to 37 °C for 10 min before LPA 18:1 (Avanti Polar Lipids Inc., Alabaster, AL, USA), solved in PBS containing 0.2% human serum albumin in indicated concentrations, was added. In cell line experiments, Ki16425 (Sigma-Aldrich) was used as LPA receptor antagonist in concentrations of 0, 2, or 20 μM 1 min prior to the stimulation with LPA. The change in cytosolic free calcium ([Ca2+]i) was calculated by dividing the measured fluorescence intensity at 510 nm with different excitation wavelengths (ratio 340 nm/380 nm). The baseline levels were subtracted. Adenosine triphosphate was used as a positive control, PBS with 0.2% human serum albumin as a negative control.
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8

Lysophosphatidic Acid Assay Protocol

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LPA (Oleoyl-L-α-lysophosphatidic acid sodium salt, L-7260) and ki16425 (SML0971) were purchased from Sigma (St. Louis, MO, USA).
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9

APAP-Induced Liver Injury Model

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C57BL/6 mice were purchased from Orient Bio (Seongnam, Korea). All experiments involving animals were approved by the Institutional Review Committee for Animal Care and Use at Sungkyunkwan University (Suwon, Korea). The mice were fasted for 16 h. APAP (Sigma, St Louis, MO, USA) was dissolved in 55–60 °C warm 1 × PBS, cooled to 37 °C, and administered to the mice by oral gavage (400 mg kg−1). LPA (AVANTI, Alabaster, AL, USA) or NAC was dissolved in PBS with 1% DMSO or in PBS, respectively, and intraperitoneally injected into the mice 30 min prior to or 1 or 3 h after the APAP administration. The LPA receptor antagonists KI16425 (Sigma) and H2L 5765834 (TOCRIS, Minneapolis, MN, USA) were intraperitoneally injected at 30 min prior to the LPA administration.
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10

Whole-Embryo Culture and Pharmacologic Inhibition

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Whole-embryo culture was performed as described previously (Koike et al., 2009 (link)). In brief, embryos were dissected at E7.5 and cultured in 100% rat serum (Charles River) supplemented with 2 mg/ml glucose in a culture bottle placed in a rotation drum culture system (Ikemoto Rika) at 37°C under 5% O2, 5% CO2, and 90% N2 for 24 h. In the pharmacologic experiments, embryos were incubated with the following reagents: 3-(4-[4-([1-(2-chlorophenyl)ethoxy]carbonyl amino)-3-methyl-5-isoxazolyl]benzylsulfanyl) propanoic acid (Ki16425, Sigma; 10 µM), (R)-phosphoric acid mono-[2-amino-2-(3-octyl-phenylcarbamoyl)-ethyl] ester (VPC23019, Avanti Polar Lipid; 10 µM), and (S)-(+)-2-methyl-1-[(4-methyl-5-isoquinolynyl)sulfonyl] homopiperazine dihydrochloride (H1152, Calbiochem; 0.1 mM), phenylarsine oxide (Sigma-Aldrich; 0.1 µM), monensin (Nacalai Tesque; 50 nM), leupeptin (Peptide Institute; 25 µg/ml), 5-(N-ethyl-N- isopropyl)-amiloride (EIPA, MedChemExpress; 50 µM), dynasore (Tocris Bioscience; 20 µM), and pitstop 2 (Selleck Chemicals, 10 µM).
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