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58 protocols using dm500 microscope

1

Quantifying Hepatic Polyploidy via Histology

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Histology was determined by fixing the livers in 10% phosphate-buffered formalin, processing, embedding in paraffin, and then staining with H&E. Hepatic polyploidy was assessed cytophotometrically by subjecting liver tissue to a Feulgen reaction with room-temperature hydrolysis (4 N HCl). Stained slides were captured on a LEICA DM500 microscope, equipped with a LEICA Application Suite (Version 1.8.1) camera. Digitalized images were analyzed using Image J open source software and the integrated optical density parameter, which shows the average DNA quantity in the nuclei of each population.
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2

Quantifying Leishmania Infection in Murine Macrophages

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Peritoneal macrophages from BALB/c mice were maintained in RPMI medium supplemented with 10% (v/v) FBS. The cells (5x105) were infected with late stationary promastigotes at a ratio of 10 parasites per macrophage for 4 h at 37°C. The infected cells were washed 3 times with incomplete RPMI 1640 (Life Technologies, Carlsbad, CA, USA) to remove non-internalized promastigotes and incubated at 5% CO2, 37°C for 0, 24 and 48 h. At the end of the assay, the infected macrophages were stained using the Diff Quick kit (LABORCLIN, Pinhais, Paraná, Brazil), and intracellular parasites were counted using a Leica DM500 microscope with a 100x objective. The parasite burden was verified by counting the number of infected macrophages in 300 cells (technical triplicates).
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3

Quantifying Neurogenesis via DCX Immunohistochemistry

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Positive cells for the DCX marker were identified with a specific antibody to DCX (Santa Cruz Biotech, Santa Cruz, CA, USA) and visualized with the peroxidase method [24 (link),65 (link)]. Cells were counted exhaustively using a 40× objective. Counting was done as previously described using the modified optical dissector method under bright-light microscopy (DM500 microscope equipped with a video camera ICC50; Leica, Buffalo Grove, IL, USA). The cells appearing in the uppermost focal plane were excluded to avoid over-sampling [59 (link)]. The resulting numbers were multiplied by six to obtain the estimated total number of DCX-associated cells per granule cell layer.
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4

Quantitative Analysis of Small Airway Epithelium

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All slides were coded and randomised to blind the analyst (S.J.B.). Images of the small airway epithelium (small airways defined as less than 2 mm in diameter and lacking cartilaginous support) were taken, and overlapping was strictly avoided. Eight images were randomly selected from the total images using an online randomisation generator for measurements from each slide, for each of the biomarkers. Images were taken using a Lecia ICC50 W camera mounted to a Lecia DM 500 microscope at 40x magnification at the bright field. Measurements were performed by computer-assisted image analysis using Image Pro Plus V7.0 software (Media Cybernetics, USA). All biomarkers (TGF-β1, pSMAD 2/3 and SMAD 7) were quantified as percentage epithelial area showing positive staining and number of positively stained basal epithelial cells (identified as small, nearly cuboidal cells with prominent nuclei, attached to the basement membrane, and differentiated from pseudostratified, or simple epithelia based on histological differences) and cells in the RBM per mm of RBM length.
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5

Microscopic Visualization of S. pyogenes Biofilm Inhibition

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The anti-biofilm effect of LME was further confirmed with the help of light microscopy; the S. pyogenes biofilms were allowed to grow on glass coverslips placed in 24-well microtiter plate, both in the presence and absence of LME (at BIC) under biofilm-forming conditions (37 °C for 24 h without shaking). Then, the coverslips were gently washed with PBS and stained with 0.4% crystal violet for 10 min; excess stain was removed by washing, air dried, and observed under a light microscope (Leica DM 500 microscope), and pictures were captured with an attached digital camera.
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6

Evaluating E. coli Impacts on Worms

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E. coli strains were cultured in soy medium with the indicated treatments at 37 °C for 12, 24 or 48 h. The pretreated bacterial liquid was concentrated and seeded on B12-deficient NGM agar plates. Pacdh-1::GFP worms in the L1 stage were dropped on the plates and cultured until the L4 stage. They were collected, anesthetized in M9 containing levamisole (1 mg/mL) and mounted on glass slides for imaging. All images were taken with a Leica DM500 microscope with fixed exposure parameters.
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7

Pulmonary Artery Measurement in IPF

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Arterial images were acquired from NCs and patients with IPF by using a 4× objective in a vertical uni-direction to avoid overlap. We used a Leica DM 500 microscope with attached Leica IC50W digital camera for analysis. Using measuring tools from the ProPlus 7.0 program, the external length (from one end to the other end of the adventitia) for pulmonary arteries was measured. These measurements were used for arterial classification into six groups: 100–1000 µm (interspaced 100 or 200 µm), similar to the strategy used in our earlier study [3 (link)].
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8

Immunohistochemical Analysis of TNF-α Expression

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Immunohistochemical examinations were carried out based on the streptavidin-biotin immune-peroxidase technique. Four-μm paraffin sections were mounted, dewaxed, and rehydrated with phosphate buffered saline (PBS) (pH 7.2). Then, heat induced antigen retrieval was undertaken in citrate buffer (pH 6) for 20 minutes. In order to block the activity of endogenous peroxidase, sections were treated with 3% hydrogen peroxide for 10 minutes and washed in PBS. Overnight incubation of slides with the primary antibody anti TNF-α rabbit polyclonal antibody (1:50 dilution, Cat. No. A0277; AB clonal, Woburn, MA, USA) was undertaken. Then, slides were incubated with a secondary antibody and visualized by using the chromagen (3, 3’-diaminobenzidine tetrahydrochloride). Sections were counterstained with Mayer’s hematoxylin, washed with distilled water and PBS, dehydrated, and mounted. Light microscopic examination was done at the Department of Anatomy, Faculty of Medicine, Zagazig University. The images of the histological sections were obtained using a light microscope fitted with a digital camera (The Leica DM500 microscope, Leica ICC50 W Camera Modul, Cambridge, UK, Anatomy Department, Faculty of Medicine, Zagazig University, Egypt).
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9

Microscopic Imaging and Microarray Analysis

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A Leica DM500 microscope and Leica ICC50 HD camera were coupled to the capturing software LAS EZ 2.0.0. Microphotographs were captured with the same light parameters and the final image was assembled with the software Adobe Photoshop CS5 (Adobe Systems Incorporated, California, USA). Microarrays were also scanned using a scanner (Epson Perfection V750 Pro) and quantified with the MAPIX software (version 7.3.1).
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10

Nanoparticle Cytotoxicity Assay

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5 × 105/ml HCT-116 or Caco-2 cells were seeded in 12-well plates, cultured in DMEM complete media, and then incubated for 24 h (5 % CO2 and 37 ℃). Cells were incubated with increasing concentrations of the NPs (0.1–1.6 mM) for 24–48 h. The morphological changes were visualized, examined, and images were captured using Leica DM500 microscope and compared with control untreated cells.
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