The largest database of trusted experimental protocols

15 protocols using nb300 318

1

Immunofluorescence and Immunoblot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
5000 cells were seeded in laminin-coated 24-well plates. After fixation with 4% paraformaldehyde, cells were permeabilized with 0.1% Triton X100 for 15 min at room temperature. The cells were then incubated overnight at 4 ℃ with CIC antibody (NB110-59,906, NOVUS). Samples were rinsed three times in PBS and incubated for 1 h at room temperature with AlexaFluor 594 donkey anti-rabbit secondary antibody (Thermo Fisher Scientific). Nuclei were stained with 0.5 µg/ml DAPI for 1 min at room temperature. Images were acquired using fluorescence microscopy. The primary antibodies used for the immunoblots: anti-CIC (NB110-59,906, NOVUS), anti-ETV4 (10,684–1-AP, Proteintech), anti-xCT (NB300-318, NOVUS), anti-ACTB (A3854, Sigma), anti-GAPDH (2118, Cell Signaling).
+ Open protocol
+ Expand
2

Quantitative Western Blot Analysis of xCT

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue samples were homogenized using a total protein extraction kit (BioChain) following the manufacturer’s instructions. Protein concentration in lysates was determined by bicinchoninic acid (BCA) protein assay (Pierce). Rabbit anti-xCT antibody (1:2000 dilution, Novus NB300-318) was used according to a standard western blotting protocol. After enhanced chemiluminescence (ECL) exposure, blots were washed and re-probed with rabbit anti-actin antibody (Cell Signaling Technology 4967S; 1:5000) as a loading control. To verify efficient extraction of xCT from the membrane during tissue lysis, an anti-Na,K-ATPase antibody (Cell Signaling Technology 3010S; 1:5000) was used as an additional control for western blotting [16 (link)]. Blots were scanned and signal was quantified using ImageJ (National Institutes of Health).
+ Open protocol
+ Expand
3

Immunoblot Analysis of Cystine Transporter Regulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoblots were prepared as previously described (41 (link)) and membranes were probed with antibodies against Slc7a11 (Novus Biologicals, NB300-318), UPF1/Rent1 (sc H-300), UPF2/Rent2 (kindly provided by J. Lykke-Andersen), Phospho-eIF2α (Epitomics, 1090-1), Total eIF2α (sc-11386), ATF4 (sc-200) and α-Tubulin (T9026, Sigma). RNA assessment: Isolation of RNA, cDNA generation, real-time PCR, DRB treatment and RNA stability experiment were done as described previously ((16 (link)). Real time primers for SLC7A11 are; human, 5′-GGGCATGTCTCTGACCATCT-3′ and 5′-TCCCAATTCAGCATAAGACAAA-3′; mouse 5′-TTGCAAGCTCACAGCAATTC-3′ and 5′-AGGGCAACCCCATTAGACTT-3′. Glutathione, cysteine transport, and cell viability assays: Intracellular glutathione was determined fluorometrically by using a Glutathione Assay Kit (Bio Vision, K264-100) and by liquid chromatography/Mass Spec (Metabolon, Durham, North Carolina) as previously described (17 ). Intracellular cysteine was also assessed by LC/MS by Metabolon.
+ Open protocol
+ Expand
4

Cell Lysis and Protein Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-cell extracts were prepared from 1 × 106 cells using (RIPA) buffer (50 mM Tris-Cl, pH 6.8, 100 mM NaCl, 1%Triton-X-100, 0.1% SDS) supplemented with complete mini protease inhibitor cocktail (Roche Applied Sciences) for 20 minutes on ice and processed according to standard protocols. Anti-SLC7A11 antibody (Novus NB300-318) was used for detection with chemiluminescence.
+ Open protocol
+ Expand
5

Immunoblot Analysis of Cystine Transporter Regulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoblots were prepared as previously described (41 (link)) and membranes were probed with antibodies against Slc7a11 (Novus Biologicals, NB300-318), UPF1/Rent1 (sc H-300), UPF2/Rent2 (kindly provided by J. Lykke-Andersen), Phospho-eIF2α (Epitomics, 1090-1), Total eIF2α (sc-11386), ATF4 (sc-200) and α-Tubulin (T9026, Sigma). RNA assessment: Isolation of RNA, cDNA generation, real-time PCR, DRB treatment and RNA stability experiment were done as described previously ((16 (link)). Real time primers for SLC7A11 are; human, 5′-GGGCATGTCTCTGACCATCT-3′ and 5′-TCCCAATTCAGCATAAGACAAA-3′; mouse 5′-TTGCAAGCTCACAGCAATTC-3′ and 5′-AGGGCAACCCCATTAGACTT-3′. Glutathione, cysteine transport, and cell viability assays: Intracellular glutathione was determined fluorometrically by using a Glutathione Assay Kit (Bio Vision, K264-100) and by liquid chromatography/Mass Spec (Metabolon, Durham, North Carolina) as previously described (17 ). Intracellular cysteine was also assessed by LC/MS by Metabolon.
+ Open protocol
+ Expand
6

Western Blot Analysis of m6A Regulators

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed as previously reported 22 (link)-24 (link). Briefly, total proteins were extracted from human aorta samples or HASMCs by using radioimmunoprecipitation assay (RIPA) lysis buffer. The proteins were separated by SDS-PAGE and then transferred to a polyvinylidene fluoride (PVDF) membrane. After that, the membrane was blocked with 5% nonfat milk for 90 min and then incubated with the indicated primary antibody overnight at 4 °C. The primary antibodies used in this study were as follows: ALKBH5 (HPA007196, Atlas Antibodies), AIFM2/FSP1 (HPA042309, Atlas Antibodies), METTL14 (HPA038002, Atlas Antibodies), METTL3 (15073-1-AP, Proteintech), WTAP (60188-1-Ig, Proteintech), SLC3A2 (15193-1-AP, Proteintech), FTO (ab92821, Abcam), GPX4 (ab125066, Abcam), β-Actin (#8457, Cell Signaling Technology), SLC7A11 (NB300-318, Novus Biologicals), and Flag (F1804, Sigma-Aldrich) antibodies.
+ Open protocol
+ Expand
7

Comprehensive Antibody Panel for Oxidative Stress Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following primary antibodies were used for immunoblot analysis and immunohistochemistry: mouse monoclonal anti–transferrin receptor antibody (13‐6800, Invitrogen), goat polyclonal anti–Lipocalin‐2/NGAL antibody (AF1857, R&D systems), rabbit monoclonal anti–β‐actin (ACTB) antibody (AC026, ABclonal), rabbit monoclonal anti–IRP1 antibody (ab126595, Abcam), rabbit polyclonal anti–IRP2 antibody (NB100‐1798, Novus), rabbit polyclonal anti–FTH1 antibody (3998, CST), rabbit polyclonal anti–ferritin light chain (FTL) antibody (ab69090, Abcam), rabbit polyclonal anti–divalent metal transporter 1 (DMT1) antibody (20507‐1‐AP, proteintech), rabbit polyclonal anti–8‐hydroxy‐2'‐deoxyguanosine (8‐OHdG) antibody (bs1278R, Bioss), rabbit polyclonal anti–4‐Hydroxynonenal antibody (bs6313R, Bioss), anti–CD10 antibody (ab256494, Abcam), anti–Ki67 antibody (ab16667, Abcam), rabbit monoclonal anti–Cleaved Caspase‐3 antibody (9664, CST), rabbit monoclonal anti–Glutathione Peroxidase 4 antibody (ab125066, Abcam), and anti–xCT antibody (NB300‐318, Novus). Secondary antibodies used in immunoblot analysis and immunohistochemistry were as follows: HRP‐conjugated polyclonal Goat anti–Rabbit antibody (P0448, DAKO), HRP‐conjugated polyclonal Rabbit anti–mouse antibody (P0260, DAKO) and HRP‐conjugated polyclonal Rabbit anti–Goat antibody (P0160, DAKO).
+ Open protocol
+ Expand
8

Immunofluorescence Staining of XCT Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
66.1 cells were seeded on gelatin-coated glass coverslips, fixed at 48 hours with ice-cold 70% ethanol and permeabilized with 0.25% Triton. Coverslips were incubated with anti-XCT polyclonal antibody (NB300-318; Novus Biologicals, Littleton, CO; 1:50 dilution in 5% BSA). AlexaFluor 488 goat anti-rabbit secondary antibody (2.5 μg/mL; Life Technologies, Carlsbad, CA) was prepared in 5% BSA with 1% normal donkey serum. Coverslips were mounted on glass slides with ProLong Gold antifade reagent with DAPI (Molecular Probes, Eugene, OR). Slides were imaged on a Zeiss Axioskop 40 using a 63x/0.08 numerical aperture Achroplan objective. Images were captured with a Zeiss AxioCam-Cm 1.
+ Open protocol
+ Expand
9

Immunoblot and Immunohistochemistry Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies to HMGA1 (1:1000, sc-393213, Santa Cruz), SLC7A11 (1:1000, #12691, Cell Signaling), cleaved caspase-3 (Asp175, 1:1000, #9661, Cell Signaling), ATF4 (1:1000, #11815, Cell Signaling), DDDDK tag (1:1500, ab205606, Abcam), and β-actin (1:20000, #66009-1-Ig, Proteintech) were used for the immunoblot. HMGA1 (1:1000, sc-393213, Santa Cruz), xCT (1:200, NB300-318, NOVUS), Ki67 (1:200, ab16667, Abcam), and 4-hydroxynonenal (1:5000, MAB3249, R&D systems) were used for the immunohistochemistry. Ferrostatin-1 (HY-100579), erastin (HY-15763), staurosporine (HY-15141), z-VAD-FMK (HY-16658B), necrostatin-1 (HY-14622A), and cisplatin (HY-17394) were purchased from MCE (MCE, China).
+ Open protocol
+ Expand
10

Quantifying Cisplatin Resistance Factors

Check if the same lab product or an alternative is used in the 5 most similar protocols
The expression of mRNAs important for cisplatin transport (ATP7A, ATP7B, SLC31A1(CTR1)) and glutathione biosynthesis (SLC3A2(4F2HC), GCLC, GCLM, GSS, GSR, SLC7A11(xCT)) was measured using real time PCR of cDNA generated by reverse transcription of cellular RNA using random hexamers. Primers were validated using melting curve analysis, and by inspection of an electrophoretic gel for a single band of the expected size. mRNA quantification was normalized to the average of β -actin and U1 RNA expression and fold changes in resistant cells calculated using from ΔΔCt values. The expression of ATP7A, SLC31A1 and SLC7A11 proteins were measured using western blotting using primary antibodies (SC-32900 and SC-66847 (Santa Cruz) and NB300-318 (Novus).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!