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6538 uhd accurate mass q tof lc ms spectrometer

Manufactured by Agilent Technologies

The 6538 UHD Accurate-Mass Q-TOF LC/MS spectrometer is a high-resolution mass spectrometry instrument designed for accurate mass measurements. It utilizes quadrupole time-of-flight (Q-TOF) technology to provide precise mass analysis and identification of compounds.

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5 protocols using 6538 uhd accurate mass q tof lc ms spectrometer

1

Detailed Analytical Methods for Novel Compounds

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DMEM, FBS, L-glutamine, penicillin-streptomycin and SYBR Gold (molecular biology grade) were procured from Invitrogen. Caspase-3 assay kit was procured from Thermo Scientific. All single stranded oligonucleotide sequences (Table S1) and the primers for RT-PCR (Table S2) were purchased from Integrated DNA technologies (IDT). DMSO, MTT, Hoechst 33258 and DAPI were obtained from Sigma Aldrich (Merck). All other chemicals were of analytical reagent grade and used without further purification unless otherwise stated. Ultrapure water (double-distilled) obtained from Milli-Q Gradient ultrapure water system (Millipore) and was used in all experiments. 1H and 13C NMR spectra were recorded on Bruker AV-400 MHz spectrometer with chemical shifts reported as parts per million (ppm) (in DMSO-d6, tetramethylsilane as an internal standard) at 20 °C. UV-vis absorption and emission spectra were measured in quartz cuvettes of 1 cm path length. HRMS were obtained on Agilent Technologies 6538 UHD Accurate-Mass Q-TOF LC/MS spectrometer. HPLC traces were obtained from Shimadzu analytical HPLC.
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2

Characterization of Organic Compounds

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All the chemicals, reagents, oligos (dA20, dT20, dA10, dT10, dG10, dC10 and d(AATT)5), control probes (Hoechst 33258, ethidium bromide and propidium iodide), primary antibody, Alexa A488-coupled secondary antibody, DNase I and RNase were purchased from Sigma-Aldrich. 1H and 13C-NMR spectra were recorded on a Bruker AV-400 MHz spectrometer with chemical shifts reported as parts per million (ppm)(in CDCl3/DMSO-d6, tetramethylsilane as an internal standard) at 20 °C. UV-vis absorption and emission spectra were measured in quartz cuvettes of 1 cm path length. The absolute fluorescence quantum yields were determined using an integrating sphere for the samples on FLSP920 spectrometer (Edinburgh Instruments). High resolution Mass spectra (HRMS) were obtained on Agilent Technologies 6538 UHD Accurate-Mass Q-TOF LC/MS spectrometer.
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3

Nuclear Magnetic Resonance Characterization

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1H and 13C NMR were recorded on a Bruker AV-400 spectrometer with chemical shifts reported as ppm (in CDCl3 with tetramethylsilane as internal standard). High resolution mass spectra (HRMS) were obtained on Agilent Technologies 6538 UHD Accurate-Mass Q-TOF LC/MS spectrometer. Elemental analysis was carried out on ThermoScientific FLASH 2000 Organic Element Analyzer.
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4

Comprehensive Characterization of Novel Compounds

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All the chemicals, reagents, single-stranded oligos (dA20, dT20, dG20, dC20), self-complementary oligos {d(ATAT)5, (D1)mix, Drew-AT, Calf-Thymus DNA (CT–DNA), (DM1, DM2, DM3, DM4, DM5, DM6 and DM7)}, RNA, Hoechst 33258 and Cresol Violet were purchased from Sigma–Aldrich. 1H and 13C NMR spectra were recorded on a Bruker AV-400 MHz spectrometer with chemical shifts reported as parts per million (ppm) (in DMSO-d6, tetramethylsilane as an internal standard) at 20°C. UV-vis absorption and emission spectra were measured in quartz cuvettes of 1 cm path length. High resolution mass spectra (HRMS) were obtained on Agilent Technologies 6538 UHD Accurate-Mass Q-TOF LC/MS spectrometer.
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5

Characterization of Novel Fluorescent Probes

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All the chemicals, reagents, self-complementary Drew-AT, Hoechst 33258, phosphate buffer saline (PBS), 2′,7′-dichlorofluorescein (DCFDA), 5-bromo-2′-deoxyuridine (BrdU), doxorubicin (dox), hydrogen peroxide (H2O2), tert-butyl hydroperoxide (TBHP), potassium superoxide (KO2), sodium hypochlorite (NaOCl), diethylamine NONOate sodium salt hydrate, sodium nitrite (NaNO2) and N-acetyl-l-cysteine (NAC) were purchased from Sigma-Aldrich. All the synthesized compounds were purified by column chromatography using Rankem silica gel (60–120 mesh). 1H and 13C NMR spectra were recorded on a Bruker AV-400 MHz spectrometer with chemical shifts reported as parts per million (ppm) (in CDCl3, DMSO-d6, tetramethylsilane as an internal standard) at 20 °C. High resolution mass spectra (HRMS) were obtained on an Agilent Technologies 6538 UHD Accurate-Mass Q-TOF LC/MS spectrometer. The UV-vis absorption and emission spectra were recorded on Agilent Technologies Cary series UV-vis-NIR absorbance and Cary Eclipse fluorescence spectrophotometers, respectively. UV-vis absorption and emission spectra were obtained in quartz cuvettes with a path length of 1 cm.
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