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18 protocols using model ckx41

1

Neonatal Heartbeat Analysis via Optical Microscopy

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Six neonates after the immobilization test were randomly selected for heartbeat counting under each exposure condition. Methylcellulose solution (4% v/v, Lot No. SLCC9072, Sigma-Aldrich Corp., St. Louis, MO, USA) was used to fix the neonates on a glass plate. Heart rate was recorded as a video file for 1 min using an optical microscope at 4× magnification (Model CKX41, Olympus Inc., Tokyo, Japan). The heart rate was counted manually using low-speed playback (×0.3) and repeated three times, with the mean values of each sample used for comparison.
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2

Virulence Estimation of VPAP30 Strain

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The virulence of the VPAP30 strain was estimated by determining its 50% lethal dose (LD50) values after 24 and 48 h of exposure, according to Reed and Muench (1938) . The LD50 was defined as the dose of the VPAP30 strain required to kill 50% of infected scallop larvae. The VPAP30 strain was tested for its pathogenicity in triplicate using 12-well tissue culture plates (Orange Scientific, Braine-l’Alleud, Belgium). Scallop larvae were added to each well of the tissue culture plate containing 4 mL of 0.22 μm-filter sterilized seawater at a concentration of 20 larvae mL-1, and the VPAP30 strain was added to the wells to obtain final concentrations of 1.37 ± 0.43 × 102, 1.37 ± 0.43 × 103, 1.37 ± 0.43 × 104, and 1.37 ± 0.43 × 105 CFU ml-1, using six wells per plate for each concentration. The inverted microscope Olympus, Model CKX41 (Tokyo, Japan) was used to determine the numbers of live and dead larvae at 24 and 48 h post-inoculation. A group of larvae were also inoculated with filtered seawater and considered the negative control.
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3

Daphnia magna Size Measurement

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D. magna length was measured one per week using an optical microscope (Model CKX41, Olympus Inc., Tokyo, Japan). The magnification, selected based on individual size, ranged from 2–4×. For this purpose, D. magna were transferred onto glass slides with a few drops of the originating medium. Body length was determined from the center of the eye to the base of the apical spine by using ImageJ program. In addition, ten neonates from the third brood in each condition were randomly pooled to check their size, following the same procedure.
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4

TGF-β1 Induces EMT in A375 and A875 Cells

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The A375 and A875 cells were uniformly seeded into a 6-well plate at a density of 4×105 cells/well, and cultured to ~75% confluence. Cells were then treated with 5 ng/ml TGF-β1. TGF-β1 (PeproTech, Inc.) was used to stimulate EMT. Untreated cells were used as a control. A phase-contrast microscope (Model CKX41; magnification, ×100; Olympus Corporation) was used to examine cell morphological changes after 24 h.
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5

Isolation and Characterization of Rat Hippocampal Neural Progenitor Cells

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Neurospheres were generated from isolated NPCs in the hippocampal area of postnatal 24-hour-old rat. Briefly, rat brains were coronally sectioned, and the hippocampal area was obtained, which was followed by tissue and cellular dissociation. Isolated cells were cultured at a density of 5 × 105 cells/mL in DMEM-F12 proliferation medium containing 2% B27 supplement, 20 ng/mL bFGF, and 20 ng/mL EGF. The cultures were observed and photographed daily under a phase contrast microscope (Model CKX41, Olympus, Japan). After 2 passages, cells were cultured for 72 and 96 h, Olympus imaging analysis system was employed to observe of neurospheres, and the number and diameter of neurospheres were counted and measured separately in 10 randomly selected microscopic fields (100x) for each flask.
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6

Investigating PC12 Cell Neurite Outgrowth

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Normal‐type PC12 cell line was purchased from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China). Meanwhile, wide‐type and Ras mutant‐type PC12 cells (RasN17) were provided by Professor Hiroyuki Osada.11 In NGF‐mimic assay, 20 000 PC12 cells were seeded in each well of a 24‐well microplate in 1 mL CM medium (Dulbeccor's modified Eagler's medium [DMEM; Thermo Scientific] containing 10% foetal bovine serum, 5% horse serum and 1% pre‐mixed antibiotics [Invitrogen]) and incubated in 5% CO2 at 37°C. The medium was replaced after 24 hours with 1 mL serum‐free DMEM medium containing a test sample or 0.5% dimethyl sulphoxide (DMSO). In the inhibitor test, the cells in 24‐well microplates were pre‐cultured with 500 μL medium containing an inhibitor for 30 minutes. Then, another 500 μL medium containing a test sample or 0.5% DMSO was added. The inhibitors of TrkA, ERK, GR, PLC, PKC and Ras (K252a, U0126, RU486, U73343, GO6983 and S3131) were obtained from Sigma. The Raf and TrkB inhibitors (AZ628 and ANA‐12) were purchased from Axon Medchem BV and Selleckchem, respectively. After 48 hours, the morphological changes in the cells were observed using a phase‐contrast microscope (Model CKX41; Olympus). About 100 cells were counted in each of three randomly chosen fields. A positive cell was defined as the neurite outgrowth of a cell longer than the diameter of cell body.
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7

Endothelial Tube Formation Assay

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A 48-well plate coated with EC matrix and solidified at 37°C was taken and 2 x 104 HUVEC cells (Human umbilical vein endothelial cells) were seeded in each well containing 300 μL of endothelial growth media and allowed to grow for 6 h. Cisplatin, Etoposide or C-10 were added to cells and incubated for 24 h. Then the cells were observed under inverted microscope (Model-CKX41, Olympus) to analyse the tube formation and images were obtained at 4x magnification.
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8

Transwell Assay for Cell Invasion

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Transwell chambers were placed with 30 μl of diluted Matrigel in a 24-well plate and incubated at 37°C for 2 hrs. 1×105 MDAMB-231 cells in serum-free DMEM were seeded into the Matrigel of Transwell chambers. 500 μl of DMEM with 10% FBS was added to the basal chamber and incubated at 37°C with 5% CO2for 48h.Cells were fixed by replacing the culture medium in the bottom and top of the chamber with 4% formaldehyde dissolved in PBS. After fixation for 15 min at room temperature, the chambers were rinsed in PBS andpermeabilized with methanol. The chamber is stained with 0.2% crystal violet for 10 min. Excess stain was washed away with dH2O. The cells were visualized under inverted microscope (Model CKX41, Olympus).
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9

IPEC-J2 Cell Cultivation and Imaging

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For a graphical overview of the time course of the different protocols and their respective steps, see Figure 6A. The IPEC-J2 cells (ACC 701, DSMZ, Braunschweig, Germany) were cultured in growth medium (see above) at 37 °C and 5% CO2 [18 (link)]. The culture medium was refreshed daily. Approximately 1 × 104 cells were plated per well in a 96-well plate (25-μm flat film bottom, Eppendorf) and grown for 3 days when 40–50% confluence was attained. Cell plates were imaged under a light microscope (Model CKX 41, Olympus, Tokyo, Japan) combined with a digital color camera (Model UC 30, Olympus, Tokyo, Japan). The Olympus cellSens Standard software (Olympus, Tokyo, Japan) was used to capture the images without any further processing. Passage (passage number 4–5), number of seeded cells and growing period were standardized in order to achieve a homogeneous cell counting prior to the in vitro test.
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10

Comprehensive Multimodal Analysis Protocol

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The following equipment was used in the study: A dual X-ray absorptiometer (DEXA; Lunar iDXA; GE Healthcare Bio-Sciences, Pittsburgh, PA, USA), a microplate absorbance reader (model 680; Bio-Rad Laboratories, Inc., Hercules, CA, USA), a micro CT system (u-CT80; SCANCO Medical AG, Brüttisellen, Switzerland), a multi-function biomechanics tester (MTS model 858; Bionix, Toledo, OH, USA), an inverted phase contrast microscope (model CKX41; Olympus Corporation, Tokyo, Japan), a fluorescence spectrophotometer (NanoDrop 1000; Thermo Fisher Scientific, Inc., Waltham, MA, USA), a G-Storm Gradient PCR thermal cycler (Veriti 96-Well; Applied Biosystems; Thermo Fisher Scientific, Inc.), a quantitative fluorescence PCR system (Light Cycler® 480; Roche Diagnostics) and a gel imaging system (Bio-Rad Laboratories, Inc.).
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