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4 protocols using ab191419

1

Immunofluorescence Analysis of Kidney Tissue

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Frozen kidney tissues were embedded in OCT and sliced into 6-μm-thick sections for immunofluorescence. Sections were fixed in 4% PFA for 15 min and then permeabilized using 0.5% Triton X-100 in PBS for 10 min. After blocking with 5% BSA in PBS for 1 h at room temperature, they were incubated with antibodies, anti-F4/80 (70076, CST), anti-CD206 (ab64693, Abcam), and anti-p-STAT3 Y705 (ab191419, Abcam) overnight at 4°C. The secondary antibodies used included Donkey anti-Rabbit IgG-AlexaFluor 488 (abs20020, Absin), Donkey anti-Rabbit IgG-Cy3 (abs20022, Absin), and Donkey anti-Mouse IgG-AlexaFluor 594 (abs20017, Absin). The nuclei were stained with Hoechst33258. Images were acquired using an Olympus FV3000 confocal microscope.
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2

Comprehensive Western Blot Analysis Protocol

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Western blot was performed as previously described (11 (link)). The primary antibodies used included anti-CD206 (ab64693, Abcam), anti-Arg-1 (ab233548, Abcam), anti-Ym1 (ab192029, Abcam), anti-SIRPα (ab191419, Abcam), anti-p-STAT3 S727 (ab32143, Abcam), anti-p-STAT3 Y705 (#9664, CST), anti-STAT3 (9662, CST), anti-α-SMA (ab7817, Abcam), anti-cleaved Caspase 3 (CST; 9662), anti-Caspase 3 (CST; #3498), anti-Bcl2 (CST; #3498), anti-E-cadherin (GTX100443, GTX), and anti-GAPDH (ab181602, Abcam). The secondary antibodies included Peroxidase AffiniPure Goat Anti-Rabbit IgG (H+L) and Peroxidase AffiniPure Goat Anti-Mouse IgG (H+L) (111035003, 115035003, Jackson, West Grove, PA, USA). Protein levels were quantified using the Image Lab software, version 3.0 (Bio-Rad, Hercules, CA, USA).
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3

Antibody-based Assay Optimization

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The monoclonal antibodies for β-actin (ab8227), SIRP-α (ab191419), α-chimaerin (ab156869), CD47 (ab3283), and CD36 (ab23680) were purchased from Abcam (Cambridge, MA). The αvβ3 integrin antibody (LM609; mAb1976) and FLAG tag antibody (M2; F1804) were purchased from Millipore Sigma (Burlington, MA). A monoclonal antibody for GULP1/CED-6 (NB100–1042) was purchased from Novus Biologicals (Littleton, CO). IRDye800-conjugated secondary antibodies (rabbit and mouse) were purchased from Li-Cor Biosciences (Lincoln, NE). pHrodo™ Red S. aureus bioparticles, Hoescht 33342 nuclear stain, and CellMask Green were purchased from Invitrogen Life Technologies (Carlsbad, CA). siRNAs against human ITGB5, GULP1/CED6, ABR, and SIRPA and a non-targeting siRNA were purchased from Dharmacon (Lafayette, CO). The pcDNA3.1 plasmid expressing FLAG-tagged (DYKDDDK) CHN1 was purchased from GenScript (OHu26717D; Piscataway, NJ) and validated by DNA sequencing. The forward and reverse primers used for the sequencing were 5′-TAA TAC GAC TCA CTA TAG GG-3′ and 5′-CCT CGA CTG TGC CTT CTA-3′, respectively.
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4

Immunophenotyping of Activated Macrophages

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Raw264.7 cells were mounted on slides, and treatments were performed. After treatment, slides were fixed in 4% PFA for 15 min and then permeabilized using 0.5% Triton X-100 in PBS for 10 min. After blocking with 5% BSA in PBS for 1 h at room temperature, they were incubated with antibodies, including anti-CD206 (ab64693, Abcam), anti-Arg-1 (ab233548, Abcam), anti-Ym1 (ab192029, Abcam), anti-SIRPα (ab191419, Abcam), and anti-p-STAT3 S727(ab32143, Abcam) overnight at 4°C. The secondary antibodies were as described above. The nuclei were stained with Hoechst33258. Images were acquired using an Olympus FV3000 confocal microscope.
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