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Peaktrak software

Manufactured by Teledyne
Sourced in United States

PeakTrak is software designed for data analysis and visualization of chromatographic data. It provides tools for processing, interpreting, and managing chromatographic data from various analytical instruments.

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3 protocols using peaktrak software

1

NMR Analysis of Purified Compounds

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Reversed-phase C-18 flash chromatography was performed using a Tekedyne Isco Combiflash® RFx4 equipped with PeakTrak software (Version 2.1.19, Teledyne Isco, Lincoln, NE, USA). NMR data for 1 were collected on a JEOL ECA-600 spectrometer (JEOL USA, Peabody, MA, USA) operating at 600.17 MHz for 1H, 150.9 MHz for 13C, and 60.8 MHz for 15N (instrument reference set to liquid NH3). The edited-g-HSQC spectrum was optimized for 140 Hz, the g-HMBC spectrum was optimized for 8 Hz, and the band selective g-HMBC experiment was optimized for 8 Hz. Chemical shifts were referenced to solvent, e.g., DMSO-d6 δH observed at 2.50 ppm and δC observed at 39.51 ppm. Chemical shifts for 15N were referenced to liquid NH3 with long range JH,N optimized for 6 Hz. NMR data for 2 were collected on a Bruker AMX 500 operating at 500 MHz for 1H and 125 MHz for 13C (Bruker Biospin, Billerica, MA, USA). The HRMS spectrum was measured using a JEOL AccuTOF-DART 4G (JEOL USA, Peabody, MA, USA) using a prototype paper spray attachment. Isotope matching was used to confirm the presence of sulfur in the molecule (Figure S2). Calculated NMR spectra were generated using Advanced Chemical Development ChemPredictor Software (Version 11 Advanced Chemical Development, Toronto, ON, Canada).
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2

Polysome Profiling of Cellular RNA

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Flash frozen tissues were lysed in Polysome Buffer (100 mM KCl, 5 mM MgCl2, 10 mM Tris–HCl pH9.0, 1% Triton X–100 and 1% sodium deoxycholate in diethylpyrocarbonate—treated water) on ice using a polytron. Insoluble cell debris was pelleted by centrifugation at 2,500 X g for 15 min at 4°C. Cyclohexamide (0.1 mg/mL) and heparin (1 mg/mL) were added to the supernatant, and equal amounts of RNA (determined by A260 using a Nanodrop Spectrophotometer) were loaded onto a 10–50% sucrose gradient (100 mM KCl, 5 mM MgCl2, 10 mM Tris-HCl pH9.0). Sucrose gradients were subjected to ultracentrifugation (151,000 X g for 2 hours at 4°C) prior to fractionation using a density gradient fractionation system (Brandel). UV absorbance (A254) was recorded using PeakTrak software (Teledyne Isco). Area under the curve (AUC) was calculated using Adobe Photoshop CS5.1 as described [89 ]. Individual peak/compartment areas were expressed relative to the total AUC of the profile.
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3

Purification and Characterization of Natural Products

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Lanthanum chloride (LaCl3) was obtained from ACROS Organics; premixed LB powder was obtained from BD Difco; the Sephadex LH-20 resin was purchased from GE Healthcare. All organic solvents were purchased from Thermo Fisher Scientific. As a step of the chemical purification process, crude extracts were fractionated by reversed-phase C-18 flash chromatography using an Isco Combiflash® RFx4 equipped with PeakTrak software (Teledyne Isco)on a RediSep Rf Gold C18 column (size 50 g). HPLC analyses of crude extracts and fractions were performed on an UltiMate 3000 system (Thermo Fisher) with an Apollo C18 column (250 mm × 4.5 mm) or a semi-preparative column (Apollo C18 column, 250 mm × 10 mm). HRESI-MS data were recorded on an LTQ Orbitrap VELOS (Thermo Fisher) or an Agilent Q-TOF high-resolution mass spectrometer. NMR data were collected on a JEOL ECA-600 spectrometer operating at 600.17 MHz for 1H and 150.9 MHz for 13C. The edited-g-HSQC spectrum was optimized for 140 Hz, and the g-HMBC spectrum was optimized for 8 Hz. Samples were dissolved in CDCl3 and chemical shifts were referenced to solvent, e.g. CDCl3 δH observed at 7.24 ppm and δC observed at 77.0 ppm.
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