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5 protocols using fitc conjugated anti mouse secondary antibody

1

Immunofluorescence Analysis of SLUG and E-cadherin

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Cells grown on glass coverslips were fixed and permeabilized in phosphate-buffered saline (PBS) containing 2% paraformaldehyde and 1% Triton X-100, while sections were dewaxed, hydrated through decreasing concentrations of ethanol, rinsed in distilled water, and subjected to antigen retrieval treatment. Samples were washed in PBS and then incubated in PBS and 1% bovine serum albumin (Sigma-Aldrich) to block nonspecific binding, before incubating with the primary anti-SLUG (clone L40C6, Cell Signaling Technology) and anti-E-cadherin (clone 32A8, Cell Signaling Technology) antibodies diluted in PBS and 1% bovine serum albumin overnight at 4 °C. Samples were subsequently rinsed in PBS and then incubated with fluorescein isothiocyanate (FITC)-conjugated anti-mouse secondary antibody (Dako). Mounting and nuclei counterstaining were performed using the ‘pro long antifade reagent with DAPI' (Invitrogen, Carlsbad, CA, USA) and observed under a fluorescence microscope (Carl Zeiss, Milan, Italy).
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2

Multicycle Virus Growth Kinetics in MDCK Cells

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Multicycle virus growth kinetics were carried out in confluent MDCK cells (12-well plate format, 5 × 105 cells/well, triplicates) infected with the indicated viruses at multiplicity of infection (MOI) of 0.001. After 1 h of virus adsorption at room temperature, cells were washed and overlaid with DMEM containing 0.3% BA and TPCK-treated trypsin and incubated at 33 °C or 37 °C. At the indicated times post infection (24, 48, 72, and 96 h), virus titers in the tissue culture supernatants were determined by immuno-focus assay (fluorescent focus-forming units, FFU/mL) using a mouse monoclonal antibody (MAb) against IAV NP (MAb HB-65; ATCC H16-L10-4R5) and a fluorescein isothiocyanate (FITC)-conjugated anti-mouse secondary antibody (Dako), as previously described [11 (link),30 (link),69 (link)]. The mean value and standard deviation (SD) were calculated using Microsoft Excel software. Cell monolayers were imaged to evaluate mCherry expression, and the presence of NLuc was quantified using Nano-Glo luciferase substrate (Promega, Madison, WI, USA) following the manufacturer’s specifications.
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3

Multicycle Virus Growth Kinetics

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Multicycle virus growth kinetics were performed in MDCK cells (12-well plate format, 5 × 105 cells/well) infected with the indicated viruses (triplicates) at multiplicity of infection (MOI) of 0.001. Virus titers in the tissue culture supernatants were determined by immunofocus assay (fluorescent focus-forming units, FFU/ml) (Nogales et al., 2014b (link)) using mouse monoclonal antibodies (MAbs) against IAV (HT103) (O'Neill et al., 1998 (link)) or IBV (B017; Abcam) NP, and a fluorescein isothiocyanate (FITC)-conjugated anti-mouse secondary antibody (Dako). Mean value and standard deviation (SD) were calculated using Microsoft Excel software.
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Immunofluorescence Staining of Frozen DRG Sections

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Frozen DRG sections (8 µm) were fixed with 4% paraformaldehyde for 30 min. Following blocking with 5% bovine serum albumin, the DRG sections were incubated with anti-TNF-α (Millipore; 1∶100) and anti-GAP43 (Millipore; 1∶100) antibodies overnight at 4°C. Following 3 washes in 1× PBS, the sections were incubated with an anti-rabbit Alexa Fluor 594-conjugated secondary antibody (Molecular Probe; for TNF-α, 1∶200) or an anti-mouse FITC-conjugated secondary antibody (Dako, for GAP-43, 1∶200) for 1 hour at room temperature. The sections were then washed twice in 1× PBS and incubated for 5 min with 4′,6-diamidino-2-phenylindole (DAPI; 10 µg/ml; Sigma) for nuclear counterstaining, followed by 3 additional washes with 1× PBS. Finally, the sections were dried, mounted and observed through fluorescence microscopy (Nikon, Eclipse, TE300). After staining, images of samples from three independent experiments were captured on a fluorescence microscope. Ratios of fluorescent signal were measured from three random of microscopic areas (18548.61 µm2 per field) [23] (link). Images were captured using a digital camera (EvolutionTM VF) and analyzed with Image-Pro Plus® software (Media Cybernetics, Silver Spring, MD).
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5

Immunofluorescence Staining of Paxillin

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After fixation in 4% paraformaldehyde, slides were washed twice in PBS, and further incubated with 0.2% Triton X-100, 3% BSA in PBS for 30 minutes at room temperature for blocking and permeabilization. Paxillin was visualized using the mouse monoclonal antibody clone 5H11 purchased from Millipore (dilution 1:100 in PBS) for 1h at room temperature, followed by the anti-mouse FITC-conjugated secondary antibody (DAKO, Glostrup-Denmark, dilution 1:100 in PBS) for 1h at room temperature. The actin cytoskeleton was visualized by staining with TRITC-phalloidin, as previously described [6 (link)]. Nuclei were counterstained with DAPI (Vector Laboratories Inc, Burlingame, CA, USA). Slides were mounted and viewed using a Leica DMI 6000 B, equipped with Hamamatsu ORCA-R2 digital camera. Cell area was measured using ImageJ software (http://rsbweb.nih.gov/ij/).
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