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11 protocols using anti caspase 8

1

Immunohistochemical Profiling of CRC Biomarkers

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Biopsies were obtained from 180 patients undergoing surgical resection of CRC at the Cancer Referral Center of Natal, Brazil. Additional clinical information has been previously described together with the method to generate the tissue microarray (TMA) blocks [37 (link)]. This research was approved by the institutional committee (No. 030/0030/2006, 20th July, 2006).
For immunohistochemistry (IHC), anti-BCL-2, anti-caspase-8, and anti-Ki-67 antibody were used (Abcam, Burlingame, CA, USA) at a dilution of 1:1500. The number of positive cells within each TMA core was counted under a light microscope with a high-power magnification (40×).
BCL-2, caspase-8, and Ki-67 expression in the tumor tissue and surrounding stromal tissue was independently assessed by two researchers, who were blinded to the clinical data. Disease staging was performed according to the modified Dukes’ criteria classification [37 (link)].
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2

Lung Cancer Protein Expression Analysis

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Lung cancer cells were lysed in a lysis buffer and protein samples were run on 8% SDS polyacrylamide gel and then transferred to Nitrocellulose (NC) membrane. After incubated with the specified primary antibody, and then corresponding horseradish peroxidase (HRP) conjugated secondary antibody, specific protein was developed by enhanced chemiluminescence (ECL) luminescence reagents (Amersham, UK). β-actin was applied as reference control. All antibodies (anti-PI3 kinase p85 alpha, anti-caspase 8, anti-MyD88 and anti-BIRC3 antibodies) were purchased from Abcam (Eugene, USA).
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3

Western Blot Analysis of Protein Samples

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Protein samples were prepared as described above and subjected to western blot analysis. The samples (50 μg) were separated by SDS-PAGE (12.5% or 15% gel) at 100 V for 2 h. Gels were then transferred to a NC membrane that had been presoaked for 10 s in transfer buffer (25 mM Tris, pH 7.4, 192 mM glycine, and 20% methanol) at 300 mA for 1.5 h or 2 h. Each NC membrane was blocked for 2 h with 0.5% dried skim milk in TBS-T (20 mM Tris, 500 mM NaCl, and 0.05% v/v Tween 20) at RT, washed three times for 15 min each with TBS-T, and then incubated with a specific primary antibody (anti-TNF-α, anti-TNFR1, anti-active caspase-3, anti-caspase 8, and anti-GAPDH, Abcam, USA) in TBS-T with gentle shaking overnight at 4°C. Each membrane was washed three times for 15 min each with TBS-T and then incubated with the secondary antibody (horseradish peroxidase-labeled goat anti-rabbit IgG) in TBS-T with gentle shaking at 37°C for 1 h. Each membrane was rinsed three times for 15 min each with TBS-T, developed with the Super Enhanced Chemiluminescence Detection kit (GE healthcare, USA). All the membranes were exposed in and scanned by a ChemiDoc XRS+ (Bio-Rad). A semiquantitative analysis based on the OD values was performed by Image Lab Software (Bio-Rad), using ANOVA to compare groups.
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4

Protein Expression Analysis in Hepa1c1c7 Cells

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The analysis of protein expression were performed as previously published [15 (link), 16 (link)]. In brief, the Hepa1c1c7 cells (1 × 105 cells/well, the cell density reached 80 to 90% confluence), were treated with PHO-S (0.3–2.0 mM), DODAC/PHO-S 1:1 (0.3–2.0 mM), and empty DODAC (0.3–2.0 mM), for 12 h, were washed with PBS and resuspended in FACS buffer with 2.5% paraformaldehyde for 1 h. After washing, cells were again resuspended in a primary antibody specific for the proteins anti-CD44, anti-CD90, anti-p53, anti-p21, anti-p27, anti-Bax, anti-Bcl-2, anti-caspase-3, anti-caspase-8 (Abcam, Cambridge, MA, United States); anti- cytochrome c, anti-DR4 (Santa (Cruz Biotechnology Inc., Santa Cruz, EUA) and anti-cyclin D1 (Cell Signaling Technology, Danvers, MA), at a concentration of 1 μg/ml at 4 °C, for 1 min. The corresponding isotope antibody was used as a negative control and as a secondary antibody was used Goat anti Mouse IgG (H/L): FITC (AbD Serotec, Raleigh, NC, United States). The cells were pelleted, washed twice with PBS, then, fluorescence-activated cell sorting (FACS) analysis was performed on BD Biosciences FACs Calibur flow cytometer (Becton Dickinson, San Jose, CA, United States) using Cell Quest and Win MDI 2.9 softwares.
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5

Western Blot Antibody Cocktail

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Anti-γ-H2AX, anti-cleaved caspase3, anti-cleaved caspase9, anti-PARP, anti-p53, anti-RAD51, anti-phospho-STAT5A (Tyr 694), anti-STAT5A, and anti-c-myc antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-caspase2, anti-caspase8, and anti-caspase10 were purchased from Abcam (Cambridge, UK). Anti-phospho-STAT5A (Ser 726) and anti-phospho-STAT5A (Ser 780) were purchased from OriGene Technologies (Rockville, MD, USA). The anti-β-actin antibody was obtained from Sigma-Aldrich (Saint Louis, MO, USA), and peroxidase-conjugated goat anti-mouse or goat anti-rabbit secondary antibodies were purchased from ZSGQ-BIO Company (Beijing, China). Anti-γ-H2AX (Ser139), conjugated with fluorescein isothiocyanate (FITC), was purchased from BD Company (Franklin Lakes, NJ, USA). 7-Hydroxystaurosporine (UCN-01) and colcemid were purchased from Sigma-Aldrich (Saint Louis, MO, USA).
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6

Western Blot Analysis of Cellular Proteins

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Western blot assays were performed to detect protein expression. Primary antibodies were used at a dilution of 1:1000 and incubated overnight at 4 °C. The anti-NAMPT, anti-CD38, anti-DNMT3A, anti-Caspase8, anti-Caspase9, and anti-Sirt6 antibodies were purchased from Abcam. The anti-Caspase3 and anti-Caspase7 antibodies were purchased from Santa Cruz (USA). Other antibodies were purchased from Cell Signaling Technology. Goat anti-rabbit or mouse IgG-HRP was used as a secondary antibody at 1:3000 dilution. Detection was performed by using ECL western blotting substrate.
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7

Immunofluorescence of Apoptosis Markers

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Histological sections were treated with xylene, rehydrated through a graded ethanol series, and pre-treated in citrate buffer (pH = 6.0) 10 min at 98°C. The primary antibodies: cleaved caspase-3 (9664, Cell Signaling, USA), cleaved caspase-6 (9761, Cell Signaling, USA), cleaved caspase-7 (9491S, Cell Signaling, USA), cleaved caspase-8 (8592, Cell Signaling, USA), cleaved caspase-9 (9509, Cell Signaling, USA), and osteocalcin (ab93876, Abcam, UK), were diluted (anti-caspase-3: 1:50, anti-caspase-6: 1:50, anti-caspase-7: 1:50, anti-caspase-8: 1:200, anti-caspase-9: 1:50, anti-osteocalcin 1:100) and applied overnight at 4°C. Alexa Fluor® 488 (A11034, Thermo Fischer, USA) or Alexa Fluor® 594 (A11037, Thermo Fischer, USA) were diluted 1:200 and then applied for 40 min at room temperature (RT). Nuclei were visualised by ProLong Gold Antifade reagent with DAPI (Thermo Fischer, USA).
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8

Immunoblotting Analysis of Cell Death Pathways

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Cells were lysed using radioimmunoprecipitation buffer (10 mM phosphate, 137 mM NaCl, 1% NP-40m 0.5% sodium deoxycholate and 0.1% sodium dodecyl sulfate) supplemented with phosphatase inhibitor cocktail (1.2 mM AEBSF, 13.6 µM bestatin 12.3 µM E-64 112 µM leupeptin1.16 µM pepstatin) and protease inhibitor cocktail (Millipore Sigma, Massachusetts, USA). For measuring HMGB1 cell-free supernatants were used. Total protein extracted from cells or tumor homogenates and cell-free supernatants were resolved using 7.5%–15% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes. Membranes were blocked in InterceptR (TBS) Blocking Buffer (Li-Cor Biosciences) followed by incubation with primary antibodies. The following antibodies were purchased from Cell Signalling Technologies: anti-Gasdermin E (Cat#40618, 1:3000), anti-β-actin (Cat#4967, 1:6000), and anti-Cleaved-Caspase-3 (Cat#9661, 1:3000). The following antibodies were purchased from Abcam: anti-Caspase-8 (Cat#ab25901, 1:3000). Membranes were then probed with secondary antibody conjugated to an infrared dye (IRDye 800CW Donkey anti-Rabbit IgG, 1:6000) and analyzed using an Odyssey DLx scanner (Li-Cor Biosciences).
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9

Apoptosis-Inducing Agents and Antagonists

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Drugs used in this study were recombinant murine sTRAIL/Apo2L (Peprotech; NJ, USA), murine TNFα (Peprotech), Debio1143/AT-406 (Selleck Chemicals; Texas, USA), LCL161 (Selleck Chemicals), SM-164 (ApexBio; Texas, USA), Birinapant (ApexBio), BV6 (ApexBio), GDC-0512 (Selleck), doxorubicin (Sigma-Aldrich; MO, USA) and cisplatin (Sigma-Aldrich). The following antibodies were used: anti-cIAP1 (Enzo Life sciences; NY, USA), anti-cIAP2 (R&D systems; MN, USA), anti-XIAP (MBL International; MA, USA), anti-FADD (Abcam; Cambridge, UK), anti-TNFR1 (Abcam), anti-TRAIL-R2 (R&D systems), anti-caspase-3 (BD Biosciences; NJ, USA), anti-caspase-8 (Abcam), anti-RIPK1 (BD Biosciences), anti-RIPK3 (ProSci; CA, USA), anti-MLKL1 (Abcam), anti-phosphoS345-MLKL (Abcam), anti-CYLD (Thermo Fisher Scientific; Massachusetts, USA), anti-crmA (Santa Cruz Biotechnology; Texas, USA), rabbit anti-GFP (polyclonal in-house antibody), goat anti-rabbit FITC (Merck Millipore; MA, USA), rabbit anti-goat-FITC (Thermo Fisher Scientific), mouse anti-GAPDH (Merck Millipore), donkey anti-rabbit HRP conjugated antibody (GE Healthcare Life Sciences; NJ, USA), goat anti-rat HRP conjugated antibody (GE Healthcare Life Sciences), and rabbit anti-mouse-HRP conjugated antibody (Sigma).
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10

Western Blot Analysis of Protein Samples

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Protein samples were prepared as described above and subjected to western blot analysis. The samples (50 μg) were separated by SDS-PAGE (12.5% or 15% gel) at 100 V for 2 h. Gels were then transferred to a NC membrane that had been presoaked for 10 s in transfer buffer (25 mM Tris, pH 7.4, 192 mM glycine, and 20% methanol) at 300 mA for 1.5 h or 2 h. Each NC membrane was blocked for 2 h with 0.5% dried skim milk in TBS-T (20 mM Tris, 500 mM NaCl, and 0.05% v/v Tween 20) at RT, washed three times for 15 min each with TBS-T, and then incubated with a specific primary antibody (anti-TNF-α, anti-TNFR1, anti-active caspase-3, anti-caspase 8, and anti-GAPDH, Abcam, USA) in TBS-T with gentle shaking overnight at 4°C. Each membrane was washed three times for 15 min each with TBS-T and then incubated with the secondary antibody (horseradish peroxidase-labeled goat anti-rabbit IgG) in TBS-T with gentle shaking at 37°C for 1 h. Each membrane was rinsed three times for 15 min each with TBS-T, developed with the Super Enhanced Chemiluminescence Detection kit (GE healthcare, USA). All the membranes were exposed in and scanned by a ChemiDoc XRS+ (Bio-Rad). A semiquantitative analysis based on the OD values was performed by Image Lab Software (Bio-Rad), using ANOVA to compare groups.
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